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ERROR in running Cellranger multi for BEAM-T #242

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Esche-Hohenstein opened this issue Jan 11, 2024 · 1 comment
Closed

ERROR in running Cellranger multi for BEAM-T #242

Esche-Hohenstein opened this issue Jan 11, 2024 · 1 comment

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@Esche-Hohenstein
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Hi all,

I meet a confusing error info when following official tutorial https://www.10xgenomics.com/support/software/cell-ranger/latest/tutorials/cr-tutorial-multi-beam-t. After I have tackled all the data and files properly and run the
multi command, it reports following info

`
[error] Pipestance failed. Error log at:
beam-ab-run/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PRO CESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk75-u80079f83b2/_errors

Log message:
Job failed in stage code

exit status 101

Waiting 6 seconds for UI to do final refresh.
Pipestance failed. Use --noexit option to keep UI running after failure.

2024-01-11 14:16:36 Shutting down.
Saving pipestance info to "beam-ab-run/beam-ab-run.mri.tgz"
For assistance, upload this file to 10x Genomics by running:

cellranger upload <your_email> "beam-ab-run/beam-ab-run.mri.tgz"

`
does anyone have idea how this error occured and what could I do? many thx : (

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Thank you for your interest in Cell Ranger. GitHub Issues are not monitored by our support team. Please e-mail [email protected] for support with Cell Ranger or visit our documentation site at https://www.10xgenomics.com/support/software/cell-ranger.

@github-actions github-actions bot closed this as not planned Won't fix, can't repro, duplicate, stale Jan 11, 2024
@github-actions github-actions bot locked and limited conversation to collaborators Jan 11, 2024
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