test-cice_ubuntu.yml

name: travis_suite_linux

# This workflow is triggered on pushes, pull-requeust, and releases
# ghactions* branch names will trigger this to support development testing
# To Do: get it working with bash and ubuntu

on:
  push:
    branches:
      - main
      - 'CICE*'
      - 'ghactions*'
  pull_request:
  release:
    types:
      - created

defaults:
  run:
    shell: /bin/csh -e {0}

jobs:
  build:
    name: "CICETesting"
    runs-on: [ubuntu-latest]
  
    steps:
      - name: install csh
        uses: ConorMacBride/install-package@v1
        with:
          apt: csh
      - name: system info
        shell: /bin/bash {0}
        run: |
          type wget
          type curl
          type csh
          echo "readlink \$(which csh): $(python -c 'import os, sys; print(os.path.realpath(sys.argv[1]))' $(which csh))"
          echo "csh --version: $(csh --version)"
          echo "uname -a: $(uname -a)"
          echo "sw_vers: $(sw_vers)"
          echo "HOME: $HOME"
          echo "GITHUB_WORKSPACE: $GITHUB_WORKSPACE"
          # echo "OS: ${{ matrix.os }}"
          # echo "ENVDEF: ${{ matrix.envdef }}"
          # echo "MINICOND: ${{ matrix.minicond }}"
      - name: clone CICE
        uses: actions/checkout@v2
        with:
          submodules: 'recursive'
      - name: link
        run: |
           ln -s ${GITHUB_WORKSPACE}/../CICE ${HOME}/cice
#           ls -al ${HOME}/
#           ls -al ${GITHUB_WORKSPACE}/
      # - name: install conda environment
      #   uses: conda-incubator/setup-miniconda@v3
      #   with:
      #     activate-environment: cice
      #     environment-file: configuration/scripts/machines/environment.yml
      #     auto-activate-base: false
      #     mamba-version: "*"
      - name: setup conda env
        shell: /bin/bash {0}
        run: |
          cd $HOME && mkdir -p cice-dirs/runs cice-dirs/baseline cice-dirs/input
          source $HOME/miniconda/bin/activate
          conda init tcsh
          cd $HOME/cice
          conda env create -f configuration/scripts/machines/environment.yml
      - name: make test directories
        run: |
          mkdir -p "$HOME/cice-dirs/runs" "$HOME/cice-dirs/baseline" "$HOME/cice-dirs/input"
      - name: check for tabs
        run: |
          cd ${HOME}/cice/cicecore
          set cnt = 0
          set ffiles = `find -P . -iname "*.f*"`
          set cfiles = `find -P . -iname "*.c*"`
          foreach file ($ffiles $cfiles)
            set fcnt = `sed -n '/\t/p' $file | wc -l`
            @ cnt = $cnt + $fcnt
            if ($fcnt > 0) then
               echo "TAB found: $fcnt $file"
            endif
          end
          exit $cnt
      # - name: setup conda env
      #   shell: /bin/bash {0}
      #   run: |
      #     cd $HOME && mkdir -p cice-dirs/runs cice-dirs/baseline cice-dirs/input
      #     source $HOME/miniconda/bin/activate
      #     conda init tcsh
      #     cd $HOME/cice
      #     conda env create -f configuration/scripts/machines/environment.yml
      - name: check conda env
        run: |
          conda activate cice && which clang && which gfortran && which mpicc && which mpifort && which make
          clang --version
          gfortran --version
          mpifort --version
          mpicc --version
          make --version
#          echo "mpifort -v:"
#          mpifort -v
#          echo "mpifort --showme:compile:"
#          mpifort --showme:compile
#          echo "mpifort --showme:link:"
#          mpifort --showme:link
#          echo "mpifort --showme:command:"
#          mpifort --showme:command
#          echo "mpifort --showme:libdirs:"
#          mpifort --showme:libdirs
#          echo "mpifort --showme:libs:"
#          mpifort --showme:libs
#          echo "mpifort --showme:incdirs:"
#          mpifort --showme:incdirs
      - name: check setup case
        run: |
          cd $HOME/cice
          ./cice.setup -m conda -e ${{ matrix.envdef }} -c case0 --pes 1x1 -s diag1
      - name: check setup test
        run: |
          cd $HOME/cice
          ./cice.setup -m conda -e ${{ matrix.envdef }} --test smoke --testid c0
      - name: run hello world unit test
        run: |
          cd $HOME/cice
          ./cice.setup -m conda -e ${{ matrix.envdef }} --test unittest --pes 2x1 -s helloworld --testid hw01
          cd *helloworld*hw01
          ./cice.build
          ./cice.run
      - name: check cice compile
        run: |
          cd (${GITHUB_WORKSPACE})/cice
          ./cice.setup -m conda -e ${{ matrix.envdef }} -c case1 --pes 2x2 -s diag1
          cd case1
          ./cice.build
      - name: download input data
        run: |
          cd $HOME/cice-dirs/input
          wget --progress=dot:giga https://zenodo.org/record/3728358/files/CICE_data_gx3_grid_ic-20200320.tar.gz && tar xvfz CICE_data_gx3_grid_ic-20200320.tar.gz
          wget --progress=dot:giga https://zenodo.org/records/10419929/files/CICE_data_gx3_forcing_JRA55_200501_20231220.tar.gz && tar xvfz CICE_data_gx3_forcing_JRA55_200501_20231220.tar.gz
          pwd
          cd CICE_data/forcing/gx3/JRA55/8XDAILY
          ln -s JRA55_gx3_03hr_forcing_200501.nc JRA55_gx3_03hr_forcing_2005.nc
          cd $HOME/cice-dirs/input
          ls -alR
#      - name: run case
#        run: |
#          cd $HOME/cice
#          cd case1
#          ./cice.run
      - name: run suite
        run: |
          cd $HOME/cice
          ./cice.setup -m conda -e ${{ matrix.envdef }} --suite travis_suite --testid ${{ matrix.os }}
      - name: write output
        run: |
          cd $HOME/cice
          ./.github/workflows/write_logfiles.csh
          cd testsuite.${{ matrix.os }}
          ./results.csh
      - name: successful run
        if: ${{ success() }}
        run: |
          echo "${{ job.name }} PASSED"
      - name: trap failure
        if: ${{ failure() }}
        run: |
          echo "${{ job.name }} FAILED"
          exit 99