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The currently used inflate implementation works pretty well, but is a lot slower than zlib. This means that unless we use multiple threads, bamrescue is slower than gzip. Switching to a state-of-the-art inflate implementation could make bamrescue as fast as gzip with a single thread, and much faster with multiple threads.
The text was updated successfully, but these errors were encountered:
Update the benchmarks against gzip -t, then, and also add samtools quickcheck. The latter should be faster than both gzip and bamrescue, but only checks for corruption in the header and the footer.
The currently used inflate implementation works pretty well, but is a lot slower than zlib. This means that unless we use multiple threads, bamrescue is slower than gzip. Switching to a state-of-the-art inflate implementation could make bamrescue as fast as gzip with a single thread, and much faster with multiple threads.
The text was updated successfully, but these errors were encountered: