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Detailed statistics to be used for optional repair #5

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Arkanosis opened this issue Jul 3, 2017 · 0 comments
Open

Detailed statistics to be used for optional repair #5

Arkanosis opened this issue Jul 3, 2017 · 0 comments
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@Arkanosis
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Arkanosis commented Jul 3, 2017

Optionally (?) output the offsets and size of unrecoverable corrupted blocks to a file (eg. bamrescue.$PID.log).

This file could then be used to get the non-corrupted blocks from the original bam file to then repair the corrupted bam file without having to copy the whole original file again (expect a few kiB of non-corrupted bgzf block, instead of a few GiB of bam file).

@Arkanosis Arkanosis self-assigned this Jul 3, 2017
@Arkanosis Arkanosis changed the title Detailed statistics for repair Detailed statistics to be used for optional repair Jun 17, 2018
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