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Optionally (?) output the offsets and size of unrecoverable corrupted blocks to a file (eg. bamrescue.$PID.log).
This file could then be used to get the non-corrupted blocks from the original bam file to then repair the corrupted bam file without having to copy the whole original file again (expect a few kiB of non-corrupted bgzf block, instead of a few GiB of bam file).
The text was updated successfully, but these errors were encountered:
Optionally (?) output the offsets and size of unrecoverable corrupted blocks to a file (eg.
bamrescue.$PID.log
).This file could then be used to get the non-corrupted blocks from the original bam file to then repair the corrupted bam file without having to copy the whole original file again (expect a few kiB of non-corrupted bgzf block, instead of a few GiB of bam file).
The text was updated successfully, but these errors were encountered: