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Vignettes summary

Table: Reproducible analyses from the participants.

Hackathon Participant Title Language Vignette Additional info
scNMTseq Al JalalAbadi PLS
scNMTseq Wancen Mu and Michael Love CV-MOFA
scNMTseq Josh Welch LIGER analysis of scNMT-seq
scNMTseq Arshi Arora MOSAIC analysis of scNMT-seq
scProteomics Lauren Hsu Exploratory analyses
scProteomics Chen Meng Predicting partially overlapping data
scProteomics Pratheepa Jeganathan Latent Dirichlet Allocation
scProteomics Yingxin Lin Integrative analysis of breast cancer survival based on spatial features
scSpatial Alexis Coullomb Neighbours Aggregtion
scSpatial Joshua Sodicoff Utilizing LIGER for the integration of spatial transcriptomic data
scSpatial Dario Righelli SpatialExperiment Analysis
scSpatial Amrit Singh seqFISH+scRNASeq integration using semi-supervised glmnet
scSpatial Hang Xu Cortex seq-FISH + scRNA data - gene selection