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DESCRIPTION
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Package: UCSC.utils
Title: Low-level utilities to retrieve data from the UCSC Genome Browser
Description: A set of low-level utilities to retrieve data from the UCSC
Genome Browser. Most functions in the package access the data via
the UCSC REST API but some of them query the UCSC MySQL server
directly. Note that the primary purpose of the package is to support
higher-level functionalities implemented in downstream packages
like GenomeInfoDb or txdbmaker.
biocViews: Infrastructure, GenomeAssembly, Annotation, GenomeAnnotation,
DataImport
URL: https://bioconductor.org/packages/UCSC.utils
BugReports: https://github.com/Bioconductor/UCSC.utils/issues
Version: 1.3.1
License: Artistic-2.0
Encoding: UTF-8
Authors@R: person("Hervé", "Pagès", role=c("aut", "cre"),
email="[email protected]")
Imports: methods, stats, httr, jsonlite, S4Vectors
Suggests: DBI, RMariaDB, GenomeInfoDb, testthat, knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
Collate: 00utils.R
UCSC.api.url.R
REST_API.R
list_UCSC_genomes.R
get_UCSC_chrom_sizes.R
list_UCSC_tracks.R
fetch_UCSC_track_data.R
UCSC_dbselect.R
zzz.R