ci.yml

name: test package
concurrency:
  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
  cancel-in-progress: true
on:
  push:
    branches:
      - main
      - devel
permissions:
  contents: write
jobs:
  test:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: actions/setup-python@v5
        with:
          python-version: 3.9
          cache: 'pip'
      - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV 
      - run: pip install torch==2.3.0 # because torch_scatter contains import torch in the setup.py, we have to install torch first
      - run: pip install torch-scatter -f https://data.pyg.org/whl/torch-2.3.0+cpu.html # it seems a wheel is necessary to install torch-scatter
      - name: regular install
        run: pip install .
      - name: attempt import
        run: python -c "import chromatinhd"
      - name: test install
        run: pip install -e .[test]
      # - uses: jpetrucciani/ruff-check@main
      - name: test
        run: pytest
      # - run: mkdocs gh-deploy --force