diff --git a/.idea/dictionaries/ktsukanov.xml b/.idea/dictionaries/ktsukanov.xml index 7477a0b..0e8ae16 100644 --- a/.idea/dictionaries/ktsukanov.xml +++ b/.idea/dictionaries/ktsukanov.xml @@ -12,6 +12,7 @@ clinvar cython dataframe + debian ensembl ensg exon @@ -19,6 +20,7 @@ hgnc hgvs hsapiens + htslib intron introns libbz @@ -31,6 +33,7 @@ preprocessing pyhgvs refseq + samtools trinucleotide unhashable vaccession diff --git a/README.md b/README.md index a885d94..b5e448f 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,7 @@ Please see the corresponding module README file for more information. ## Installing requirements The commands below has been tested for Ubuntu 18.04 and newer. You might have to adjust commands and package names if -you're using a different distribution. Note in particular that some older Debian and Ubuntu distrubutions include +you're using a different distribution. Note in particular that some older Debian and Ubuntu distributions include ancient htslib/samtools/bcftools versions, which will not work. ```bash diff --git a/setup.py b/setup.py index c950569..ec155bd 100644 --- a/setup.py +++ b/setup.py @@ -1,7 +1,6 @@ from setuptools import setup -description = """ -Contains two packages for processing ClinVar data for Open Targets submission. +description = """Contains two packages for processing ClinVar data for Open Targets submission. * `vep_mapping_pipeline` maps variants (CHROM:POS:REF:ALT) to their most severe functional consequence according to Ensembl VEP, as well as their Ensembl gene ID and name. * `repeat_expansion_variants` parses ClinVar variant_summary file and extracts information about repeat expansion @@ -13,7 +12,7 @@ packages=['vep_mapping_pipeline', 'repeat_expansion_variants', 'repeat_expansion_variants.test'], url='', license='', - author='ktsukanov', - author_email='ktsukanov@ebi.ac.uk', + author='Kirill Tsukanov, European Variation Archive, EMBL-EBI', + author_email='eva-dev@ebi.ac.uk', description=description )