24.03

Dependencies

• AMReX: 24.03
• PICSAR-QED: 23.09
• picmistandard: release 0.28.0
• openPMD-api: release 0.15.1
• Python: 3.8 - 3.12

What's Changed

• Implemented Villasenor and Buneman deposition routine for implicit solver by @JustinRayAngus in #4623
• Particle Container to Pure SoA Again by @ax3l in #4653
• Fix: Pre-Installed AMReX w/ CUDA by @ax3l in #4668
• Add hybrid resistivity current term by @clarkse in #4661
• CI: 4 Cores Linux/Win, 3 Cores macOS by @ax3l in #4673
• Update GitHub Action versions by @WeiqunZhang in #4674
• Update Polaris install instructions by @roelof-groenewald in #4664
• Minor fix in SLURM signal forwarding description by @roelof-groenewald in #4665
• ParticleHistogram2D change openPMD access type by @n01r in #4659
• Fix docs for checksumAPI terminal call by @n01r in #4677
• CI: NVHPC 24.1 by @ax3l in #4679
• Update pyAMReX to development by @ax3l in #4680
• AMReX/pyAMReX: Weekly Update by @ax3l in #4678
• Update openPMD-viewer documentation by @RemiLehe in #4682
• Apply filtering for the charge density in full diagnostics RZ PSATD by @oshapoval in #4624
• Add automated test for spacecraft charging by @EyaDammak in #4413
• Fix: openPMD RZ Positions by @ax3l in #4686
• AMReX/pyAMReX/PICSAR: Weekly Update by @ax3l in #4690
• Lassen (LLNL) TOSS3: Update by @ax3l in #4692
• Bugfix: sum guard cell values in current density diagnostic by @roelof-groenewald in #4596
• HPC3 (UCI): -j 8 by @ax3l in #4694
• Add PICMI documentation for ReducedDiagnostics by @RemiLehe in #4693
• Obtain exact point of contact of Particles with EB by @EyaDammak in #4560
• Removed const modifier from LPInfo object on stack that was causing a… by @clarkse in #4696
• Adding a RZ version for the test "Point_of_contact_EB" by @EyaDammak in #4699
• Obtain exact time (real) when particles hit boundaries + test by @EyaDammak in #4695
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #4707
• Docs: update instructions for Fugaku supercomputer (Riken, Japan) by @lucafedeli88 in #4656
• Fix Particle Id Overflows by @ax3l in #4708
• Implementation of 4th order particle shape beyond implicit solver cases by @kale-j in #4706
• Cleanup some docstrings by @RemiLehe in #4714
• Save the normal components in the particle buffer when there is EB by @EyaDammak in #4702
• Add focusing position to Gaussian beam initialization by @aeriforme in #4639
• Update the documentation particles.rst in adding the new attributes by @EyaDammak in #4719
• PICMI: Fix unresolved reference for species by @n01r in #4722
• Improve Documentation for Laser-Ion Acceleration from Planar Target by @n01r in #4569
• Update of the time saved for scraped particles on the boundaries by @EyaDammak in #4710
• AMReX/pyAMReX/PICSAR: Weekly Update by @ax3l in #4728
• Position keyword now adds position variables in PICMI ParticleDiagnostic by @n01r in #4721
• openPMD: Fix Particle Weight Dims in 1D/2D by @ax3l in #4717
• Clang-Tidy: Fix Diagnostics Branch by @ax3l in #4731
• Exchange guard cells with the electrostatic solver by @RemiLehe in #4713
• Adding support for pml in domain for multiple patches by @RevathiJambunathan in #4632
• Update test that checks absorption of particles in PML by @RemiLehe in #4733
• Fix: Windows add_dll_directory Expand by @ax3l in #4734
• Doc: Python Bld in Separate Dir by @ax3l in #4739
• Doc: Pre-Commit Locally by @ax3l in #4741
• AMReX/pyAMReX/PICSAR: Weekly Update by @ax3l in #4745
• Clang-tidy CI tests: use clang-tidy-15 instead of clang-tidy-14 by @lucafedeli88 in #4689
• Enable WarpX::ComputeEdgeLengths in RZ by @roelof-groenewald in #4749
• New Python test: Particle-Boundary interaction by @EyaDammak in #4729
• Adding normal components to regular boundary buffer by @EyaDammak in #4742
• Add function to set domain boundary potentials from Python by @roelof-groenewald in #4740
• clean up ablastr/fields by @aeriforme in #4753
• Split clang-tidy CI test into 4 to improve performances by @lucafedeli88 in #4747
• Replace links to learn git by @RemiLehe in #4758
• Bugfix in fields.py for GPU run without cupy by @roelof-groenewald in #4750
• Release 24.03 by @ax3l in #4759

New Contributors

• @JustinRayAngus made their first contribution in #4623

Full Changelog: 24.02...24.03

24.02

Dependencies

• AMReX: 24.02
• PICSAR-QED: 23.09
• picmistandard: release 0.28.0
• openPMD-api: release 0.15.1
• Python: 3.8 - 3.12

What's Changed

• Clang-tidy: enforce clang-tidy_readability_make_member_function_const check by @lucafedeli88 in #4510
• Implement correction to ADK for high fields by @MaxThevenet in #4505
• Fix documentation for diags : coarsening ratio by @RevathiJambunathan in #4588
• AMReX/pyAMReX/PICSAR: Weekly Update by @ax3l in #4590
• Fix plasma injection from file for parallel runs by @WeiqunZhang in #4597
• Fix input of galerkin_scheme by @dpgrote in #4607
• Docs: spruce up parameters.rst by @eebasso in #4609
• atomicAdd -> lockAdd by @WeiqunZhang in #4608
• Disambiguate the routine name initialize_inputs in picmi.py by @dpgrote in #4554
• Fix undefined behavior in meanParticleVelocity by @RemiLehe in #4614
• Perlmutter (NERSC): January 2024 Update by @ax3l in #4620
• Update CuPy version in Perlmutter dependencies by @roelof-groenewald in #4621
• Use RK4 to integrate the B-field in time in the hybrid-PIC algorithm by @roelof-groenewald in #4461
• Update picmi.ElectrostaticSolver child class in external Poisson solver test by @roelof-groenewald in #4622
• Add warpx_used_inputs_file in Python input by @dpgrote in #4618
• Fix undefined behavior issue in WarpX initialization by @lucafedeli88 in #4615
• Doc: Fast, Local Compilation by @ax3l in #4603
• AMReX/pyAMReX/PICSAR: Weekly Update by @ax3l in #4630
• Temporary fix: disable hanging CI test (Python_background_mcc_1d_tridiag) by @roelof-groenewald in #4628
• Update pyAMReX by @ax3l in #4633
• Update Particle Container to Pure SoA by @ax3l in #3850
• Remove particles that are initialized in the EB by @RemiLehe in #4585
• Update DSMC picmi class initialization function by @roelof-groenewald in #4646
• AMReX/pyAMReX/PICSAR: Weekly Update by @ax3l in #4647
• Fix neutral particle got pushed by @GivenChen in #4643
• Reactivate CI test (Python_background_mcc_1d_tridiag) by @roelof-groenewald in #4650
• Grammar Change in Theory Intro by @sevicky in #4617
• Revert "Update Particle Container to Pure SoA (#3850)" by @ax3l in #4652
• AMReX: Latest development by @ax3l in #4654
• Docs: update instructions for Adastra supercomputer (CINES, France) by @lucafedeli88 in #4655
• Fix doc for doChargeConservingDepositionShapeNImplicit by @dpgrote in #4658
• Add WarpX_CCACHE Option by @haampie in #4637
• Update profile and job script for LUMI supercomputer by @lucafedeli88 in #4634
• Fix BTD/Scrape Flush Count with Filters by @ax3l in #4657
• Release 24.02 by @ax3l in #4660
• Add install instructions for ALCF's Polaris by @roelof-groenewald in #4636

New Contributors

• @GivenChen made their first contribution in #4643
• @sevicky made their first contribution in #4617
• @haampie made their first contribution in #4637

Full Changelog: 24.01...24.02

24.01

Dependencies

• AMReX: 24.01
• PICSAR-QED: 23.09
• picmistandard: release 0.28.0
• openPMD-api: release 0.15.1
• Python: 3.8 - 3.12

List of PRs merged since the last release

This list was generated with

git log 23.12.. --format='- %s'

• Release 24.01 (#4586)
• Read external fields from file in restarted simulation (#4547)
• Doc: Clean Example TODOs (#4584)
• Reduce tolerance for DSMC CI test (#4576)
• Beam-beam collision example follow-up (#4578)
• Scale fields by a dimensionless number between 0 and 1 (#4575)
• Perlmutter: Load gpu Module (#4573)
• Beam-beam collision example (#4546)
• Update dsmc and fusion binary collisions (#4572)
• Apply particle selection to BTDiagnostics (#4570)
• Update the field probe diagnostic documentation (#4564)
• Add filters for boundary scraping diagnostics (#4371)
• Add semi-implicit CI test (#4565)
• Change the sign of laser particles (#4568)
• Update explanation of why 2D simulations are not suitable for plasma-wakefield (#4544)
• Fix default initialization of runtime attributes. (#4508)
• Implicit electromagnetic solver using Picard iterations (#4071)
• Update documentation for checksum (#4561)
• Fix: BeamRelevant 1D, 2D (#4558)
• Add DSMC module (#4125)
• Add updated instructions for WarpX on Karolina (#4545)
• AMReX/pyAMReX/PICSAR: Weekly Update (#4559)
• Fix reference (#4552)
• add hybrid-PIC PoP reference to docs (#4551)
• Clean up doc to improve readability (#4555)
• Adding user defined keywords in Hybrid PIC Python class to allow for addition of constants when defining functions for resistivity and current. (#4550)
• WarpXAMReXInit: move include directive from header to cpp file (#4543)
• AMReX/pyAMReX/PICSAR: Weekly Update (#4541)
• [pre-commit.ci] pre-commit autoupdate (#4539)
• Add updated instructions for WarpX on Karolina (#4477)
• Doc: CUDA 11.7+ (#4538)
• Spruce up kinetic_fluid_hybrid_model.rst (#4534)
• Docs: rename and spruce up boundary conditions section (#4537)
• Spruce up PIC theory section (#4536)
• Spruce up ml_dataset_training.rst (#4512)
• Fix CI for ROCm 6.0 (#4527)
• Documentation: numbered reference formatting (#4528)
• Spruce up boosted_frame.rst (#4530)
• Spruce up cold_fluid_model.rst (#4531)
• Spruce up input_output.rst (#4532)
• Fix chirp documentation (#4533)
• Doc: Extend a Simulation Workflow (#4520)
• Spruce up amr.rst (#4529)
• WarpXSumGuardCells: move function definitions in cpp file (#4521)
• Doc: Fix ChecksumAPI autofunction (#4524)
• Improve documentation for laser chirp (#4525)
• move function definition to cpp file (#4522)
• Add ability to run checksum on openPMD files (#4519)
• Clang-Tidy: readability-qualified-auto (#4507)
• Clang-Tidy: performance-noexcept-move-constructor (#4504)
• Bibliography: make author family names appear last (#4506)
• Doc: Examples Before APIs
• Doc: Fix Sphinx Warnings
• Bibliography: improved citations (#4513)
• Update descriptions of hybrid-PIC examples (#4479)
• Clang-tidy: enable no-malloc check in clang-tidy CI test (#4518)
• Clang-Tidy: readability-inconsistent-declaration-parameter-name (#4514)
• Clang-Tidy: readability-braces-around-statements (#4511)
• workflow training neural network from warpx data (#4499)
• AMReX/pyAMReX/PICSAR: Weekly Update (#4503)
• Use more consistent species types in fusion module (#4480)
• Clang-tidy: enable readability-duplicate-include check in clang-tidy CI test (#4496)
• AMReX/pyAMReX/PICSAR: Weekly Update (#4489)
• Custom class for bibliography style (#4482)
• [pre-commit.ci] pre-commit autoupdate (#4500)
• Move external field parameters out of WarpX class (#4441)
• Tidy-Clang: performance-type-promotion-in-math-fn (#4497)
• Clang-Tidy CI: Keep Going after Errors (#4491)
• Clang-Tidy: Update performance and readability (#4492)
• sqrt -> std::sqrt (#4490)
• macOS CI: Fix brew installation (#4493)
• Add latex_theory/allbibs.bib to bibliography list and delete duplicates (#4481)
• Set alpha mass directly from NIST data (#4478)
• pybind11: v2.11.1+ (#4473)
• Fix typos in comments and docs (#4471)
• Correct on-axis field boundary for RZ (#4464)
• Rename Depose -> Deposit (#4474)
• Doc: Streamline Python Input (#4472)
• macOS CI: export CCACHE_DEPEND=1 (#4475)
• Docs: Fix Formatting in parameters.rst
• Docs: Fix Many Small Errors & Warnings
• Doc: Restructure Examples (#4467)
• Remove brew cache (#4470)

23.12

Dependencies

• AMReX: 23.12
• PICSAR-QED: 23.09
• picmistandard: release 0.28.0
• openPMD-api: release 0.15.1
• Python: 3.8 - 3.12

List of PRs merged since the last release

This list was generated with

git log 23.11.. --format='- %s'

• Release 23.12 (#4469)
• Add external current handling to Ohm's law solver (#4405)
• fix preprocessor defs for 1D in two locations (#4465)
• Bugfix in fields.py mesh() with ghost cells included (#4466)
• Fix typo in "write_diagnostics_on_restart" (#4463)
• Make geometry.dims abort message more user-friendly (#4459)
• New Cache Strategy (#4456)
• Initial commit (#4460)
• Set amrex.omp_threads = "nosmt" (#4393)
• AMReX: Update to development (#4455)
• Clang-Tidy Cache (#4453)
• Allow multiple injection sources per species (#4196)
• Frontier (OLCF): cupy (#4247)
• add start/end moving step (#4437)
• Contributing style and conventions additions (#4452)
• CPU CI: Always Serialize (#4451)
• Maxlevel user option for external field initialization (#4326)
• Doc: Fix Typo <probe>.integrate = true (#4449)
• CI: numprocs * numthreads <= 2 (#4450)
• AMReX/pyAMReX/PICSAR: Weekly Update (#4447)
• Move AnyFFT.H and FFT wrappers into ablastr (#4005)
• Clang tidy CI test: add almost all modernize-* checks (#4319)
• Set the particle fields directly to the constant external fields (#4339)
• fix minor bug in picmi ParticleDiagnostic (#4442)
• Make whitespace alignment more consistent (#4440)
• Add gaussian_parse_momentum_function (#4400)
• Make the static variable "authors" of the WarpX class a private member of the WarpX class (#4404)
• Refinement patch parser (#4299)
• Add python binding to WarpXParticleContainer::sumParticleCharge (#4406)
• [pre-commit.ci] pre-commit autoupdate (#4433)
• Add paper using WarpX for laser-driven fusion (#4428)
• AMReX: Weekly Update (#4431)
• Fix unused variable with OpenPMD=OFF (#4421)
• Doc: Laser Pulse Manip. for LPI (#4414)
• Parallelize scraping (#4418)
• Remove legacy references to EvolveEM which had been renamed Evolve (#4422)
• Update AMReX to latest commit (#4423)
• CI: Unbreak macOS (#4427)
• AMReX/pyAMReX/PICSAR: Weekly Update (#4417)

23.11

Dependencies

• AMReX: 23.11
• PICSAR-QED: 23.09
• picmistandard: release 0.28.0
• openPMD-api: release 0.15.1
• Python: 3.8 - 3.12

List of PRs merged since the last release

This list was generated with

git log 23.10.. --format='- %s'

• Release 23.11 (#4410)
• In doGatherShapeN, for RZ use temporaries for Er and Etheta (#4409)
• add Nicks (2023) to science highlights (#4407)
• Bug fix: the electric field calculation for ionization had a bug if external electric field and grid electric field co-exist in the quasi-cylindrical geometry. This commit fixes this bug. (#4094)
• Allow negative mean velocity with NFluxPerCell (#4397)
• Remove Cori from documentation (#3939)
• Remove call to WarpX::GetInstance from InitializeMacroMultiFabUsingParser (#4138)
• Properly flush metadata of incomplete BTD, at the end of simulation (#4372)
• Python 3.12: Refactor out Distutils (#4392)
• Doc: Fix IPAC23 DOI (#4399)
• Docs: Add Particles-in-PML Paper (#4398)
• AMReX/pyAMReX/PICSAR: Weekly Update (#4396)
• Doc: Python Backtrace in CXX Segfaults (#4391)
• CI: setup-python < 3.12
• Fix External AMReX Builds (#4390)
• Clang tidy CI test: add some cppcoreguidelines-* checks (#4149)
• Machines: HDF5 & ADIOS2 Tools in PATH (#4389)
• Lassen (LLNL): h5py (#4388)
• AMReX: Weekly Update (#4387)
• GetAndSetPosition: General Particle PIdx (#4386)
• add instructions for leonardo hpc (#4353)
• Python: Rename Callback Files (#4381)
• Add RZ support for Ohm's law solver (#4161)
• AMReX/PICSAR: Weekly Update (#4363)
• Fix: Fails in Python Callbacks Abort (#4380)
• [pre-commit.ci] pre-commit autoupdate (#4378)
• CMake: pip_install_nodeps Target (#4361)
• Reorder WarpX.H so that public, protected, and private only appear once (#4340)
• Fix: CMake Python_EXECUTABLE (#4379)
• Fix bug in clang-tidy configuration file (#4321)
• Restore get_particle_boundary_buffer_structs functionality from before pyamrex transition (#4367)
• Python: Clean Out Old Bindings (#4233)
• Electrostatic Diagnostics for j: Default to Direct Deposition (#4362)
• Added extended writeup to the docs for PR3991, fluids (#4365)
• Change default behavior of picmi.FieldDiagnostic and picmi.ParticleDiagnostic & fix CI tests (#4317)
• Fix issues with cupy-WarpX interoperability (#4348)
• Lassen (LLNL): TOSS3 Setup (#4346)
• [pre-commit.ci] pre-commit autoupdate (#4352)
• Add new PRL paper using WarpX (#4351)

23.10

Dependencies

• AMReX: 23.10
• PICSAR (development, incl. QED): 23.10
• picmistandard: release 0.26.0
• openPMD-api: release 0.15.1
• Python: 3.8 - 3.11

List of PRs merged since the last release

This list was generated with

git log 23.09.. --format='- %s'

• Release 23.10 (#4344)
• ensure that mass is specified (#4337)
• Badge: Minor RTD Link Cleanup
• Momentum-conserving gather for MR ratio higher than 2 (#1650)
• Close #4331 segfault when activating nuclearfusion collisions (#4338)
• CI: Unbreak macOS (libomp) (#4341)
• Add SymPy notebook to derive PSATD equations in PML (#4316)
• Merge nodal synchronization with FillBoundary calls in PML (#3534)
• Bump up HDF5 version on PM to 1.12.2.7 (#4333)
• Clean-up docs for PR3991, fluids (#4330)
• Fix clang-tidy error [readability-simplify-boolean-expr] (#4328)
• RZ m=0 mode support for particle field diagnostics (#4291)
• Add fluids in WarpX (#3991)
• Glossary: CEX, SEE (#4325)
• Add particle sorting parameters to pywarpx (#4323)
• Particle fields diagnostic support for PICMI (#4262)
• AMReX: Weekly Update (#4322)
• Add get_charge_density to python WarpXParticleContainer (#4300)
• Doc: Perlmutter (NERSC) E4S 23.05 Boost & CCache (#4302)
• fix distribution map initialization for particle buffers in BTD (#4318)
• Use cupy when available with the particle container wrapper (#4203)
• Clang tidy CI test: add almost all misc-* checks (#4268)
• Implement Galilean PML (#733)
• Lassen (LLNL): Sources & Builds Off-Home (#4311)
• Fix check of PML + Silver-Mueller compatibility (#4297)
• Prevent NaNs in Coulomb collision module (#4304)
• AMReX: Weekly Update (#4309)
• Doc: Conda CUDA Development (#4290)
• Conda: make (#4292)
• Clang tidy CI test: add misc-definitions-in-headers check (#4253)
• Add flag to set GPU-aware MPI from PICMI (#4298)
• Revert PR4266 - lower and uppers bounds (#4294)
• Doc: cupy on Perlmutter (NERSC) (#4289)
• AMReX/PICSAR: Weekly Update (#4293)
• PICMI: Add warpx_intervals option to BTD (#4288)
• add collider-relevant reduced diags (#4024)
• Quartz (LLNL): PICMI Support (#4284)

23.09

Dependencies

AMReX: 23.09
PICSAR (development, incl. QED): 23.09
picmistandard: release 0.26.0
openPMD-api: release 0.15.1

List of PRs merged since the last release

This list was generated with

git log 23.08.. --format='- %s'

• Doc: Lassen (LLNL) Cleanup
• Lassen (LLNL): GNU 11.2.1 (#4283)
• Lassen (LLNL): pyTorch w/ GNU
• Lassen (LLNL): yt fix
• Lassen (LLNL): Matplotlib fix
• Quartz (LLNL): New Modules, Clang (#4281)
• Lassen (LLNL): New SW Directory
• Lassen (LLNL): Numpy==1.22
• Lassen RHEL8 (#4278)
• Release 23.09 (#4277)
• Fix parallel hanging in lasy reading (#4276)
• Add lower and upper bound params to regular diags in PICMI (#4266)
• Docs: mpi4py in MPI-Conda Deps (#4274)
• Clang tidy CI test: add selected google-* checks (#4267)
• Use latest lasy version (#4273)
• Add particle resampling inputs to picmi.py (#4257)
• add symmetrize to PICMI (#4271)
• try fix macos CI (#4270)
• make explicit the options from full diags also available in BTD (#4256)
• Use input parameter parser for lattice elements (#4258)
• Print resampling message only if verbose is on (#4264)
• PICMI: warpx.numprocs (#4255)
• PICMI: LabFrameParticleDiagnostic w/ Species (#4254)
• Doc: PM new E4S (Boost, CCache) (#4252)
• Update .clang-tidy: remove bugprone-unchecked-optional-access
• ChargeDeposition: Remove Global WarpX Variable (#4250)
• CMake: Verify WarpX_..._src paths exit (#4249)
• Clang tidy CI test: add more readability checks to clang tidy CI test (#4146)
• Replace static function WarpX::CheckSignals() with direct call to SignalHandling::CheckSignals() (#4240)
• Update Crusher Docs and Scripts (#4246)
• Fix: PICMI BTD Diags (#4248)
• Add Python bindings to extract the timestep dt (#4244)
• Docs: Perlmutter (NERSC) Update (#4223)
• Add LabFrameParticleDiagnostic to picmi (#4148)
• Docs: WarpX HOFI Start-to-End Paper (#4221)
• AMReX: Weekly Update (#4243)
• Work-Around: Segfault in MPI_Init with HIP (#4237)
• Cleaning: Explicit Capture in Copy Lambda (#4238)
• Remove AddToMultiFabMap functions from WarpX class (#4242)
• remove unnecessary static variables from WarpX.H (#4239)
• Frontier (OLCF): MPI_Waitall issues (#4235)
• Doc: HPC Python Separate (Static/Shared AMReX) (#4226)
• Do not pre-processing routine in Python initialization (#4231)
• Fix: openPMD 1D/2D3V Constant Positions (#4227)
• Fix: WarpX Version (#4218)
• CI: Shrink NVHPC Size (#4224)
• Fix Python wrapper to extract theta (#4229)
• fix pc for BTD plotfile (#4228)
• Fix Repeated Plasma Lens: Start (#4220)
• add error message if cuda 11.6 is used with the yee solver (#4222)
• Use only 8 cores to compile on Summit (#4195)
• BTD RZ test: add missing checksum analysis (#4202)
• BoxArray in BTD has single box (#4208)
• CMake: Fix -fPIC logic that triggers shared AMReX (#4211)
• fix undefined behavior in btd intervals (#4216)
• Remove unused/untested Python file (#4217)
• add flush (#4214)
• correct zinject_plane_boost (#4213)
• Hybrid grid type not implemented in RZ geometry (#4212)
• CI: Sphinx <7.2 for now (#4215)
• pyWarpX.H: Add Include Guard (#4206)
• AMReX: Weekly Update (#4207)
• Add GPU-to-CPU mapping for Frontier (#4205)
• Affiliation update in Zenodo file (#4204)
• Include J in diagnostic output when an electromagnetic solver is not used (#4116)
• Fix: Remove Overly Exported Classes (#4200)
• Add nodal electrostatic solver (#3982)
• Electrostatic sphere tests: add missing checksum analysis (#4198)
• Automated test for externally loaded fields in the boosted frame (#4188)
• Cleanup plasma injection (#4191)
• fix time update (#4184)
• Update Python installation instructions on HPC (#4189)
• affiliation update in Zenodo file (#4190)
• Docs: HPC3 (UCI) with Only -j 12 (#4182)
• [pre-commit.ci] pre-commit autoupdate (#4186)
• AMReX: Weekly Update (#4183)
• t_lab optionally imposed for externally loaded species in the boosted frame (#4153)
• Python 3.8+ (#4173)
• Clang-tidy: add more misc-* checks to clang-tidy CI test (#4170)
• Transition to pyAMReX (#3474)
• LASY: Broadcast quantities to MPI processes (#4179)
• In picmi.py, add G to fields to plot check (#4180)
• Update PICMI interface for Gaussian flux (#4084)
• Enable divE field diagnostic with Ohm's law solver (#4178)
• Use more consistent particle type in pusher (#4175)
• Fix compilation issue with single-precision particles (#4174)
• Add Python wrapper to set the lens strength (#3748)
• Fix continuous injection of lasers (#4112)
• Fix Python test due to recent openPMD-viewer update (#4177)
• AMReX: Weekly Update (#4172)
• Doc: Update License Notice (#4171)
• Add write_diagonstics_on_restart input option (#4091)
• Doc: Gitter -> Discussions (#4168)
• Clang tidy CI test: add some misc-* checks (#4150)
• remove unused function (#4151)
• Fix typo in parameters.rst (#4152)
• Clang-tidy CI test: add two performance checks (#4158)
• [pre-commit.ci] pre-commit autoupdate (#4167)
• Clang tidy CI test: add 4 more readability-* checks to clang-tidy CI test (#4164)
• add back printing of warning messages at the end of the simulation (#4154)
• Clang-tidy CI test: add 4 new readability checks (#4163)
• Show compiler warnings with appleclang (#4166)

23.08

Dependencies

AMReX: 23.08
PICSAR (development, incl. QED): aa54e985398c1d575abc7e6737cdbc660a13765f
picmistandard: release 0.25.0
openPMD-api: release 0.15.1

List of PRs merged since the last release

This list was generated with

git log 23.07.. --format='- %s'

• Release 23.08 (#4165)
• Add a few abbreviations and terms to the glossary (#4143)
• remove WarpX::GetInstance from WarpX::InitFromCheckpoint () (#4160)
• move function from .H file to .cpp file (#4159)
• WarpX: Rule-of-Five (#4155)
• Clean up charge deposition code duplication (#4113)
• Clang tidy CI test: add almost all the cert-* checks (#4063)
• [pre-commit.ci] pre-commit autoupdate (#4145)
• Clang tidy CI test: add several readability checks to clang tidy CI test (#4124)
• Refactoring: instantiate WarpX class via MakeWarpX function (#4104)
• Move GotoNextLine helper function into ablastr (#4139)
• Remove WarpX::GetInstance call from ParserFilter functor (#4132)
• move CheckGuardCells(amrex::MultiFab const& mf) function into anonymous namespace into warpx_init_data (#4141)
• add mpi checks to clang-tidy CI test (#4135)
• Update docs to mention updated signal handling for SIGILL (#4134)
• Update docs to mention updated signal handling for SIGILL (#4134)
• add a couple of performance checks to clang-tidy CI test (#4128)
• Clang tidy CI test: add some modernize checks to clang-tidy CI test (#4133)
• remove WarpX::GetInstance() from PoissonBoundaryHandler::definePhiBCs (#4130)
• clang-tidy CI test: add misc-misleading-bidirectional check (#4140)
• AMReX: Weekly Update (#4142)
• remove superfluous includes from LatticeElements (#4131)
• Fix bug with MLMG solver, always pass ghost cells to SumBoundary (#4078)
• Improve script to compute PSATD stencil (#4016)
• fix BTD doc (#4089)
• Fix the writing of raw rho_fp (#4114)
• Initialize variables at declaration if it improves readability (#4117)
• AMReX: Update (Plotfile Write) (#4126)
• exclude cppcoreguidelines-init-variables (#4118)
• remove unused upper_bound algorithm (#4123)
• Tools: Update Copyright String (#4120)
• [pre-commit.ci] pre-commit autoupdate (#4115)
• Clang tidy CI test: add modernize-concat-nested-namespaces check to clang tidy CI test (#4098)
• WarpX class: move a couple of function definitions (#4097)
• Clang-tidy: add cppcoreguidelines-interfaces-global-init check (#4107)
• Fix timestep duration plot script download link (#4105)
• Update perlmutter_gpu.sbatch (#4100)
• exclude some checks from clang-tidy CI test (#4108)
• AMReX/PICSAR: Weekly Update (#4111)
• Merge MPI Reduction Calls (#4051)
• Fix chi_min and chi_max in ParticleExtrema reduced diags (#4101)
• Update inputs files in WarpX (#4103)
• Fix: Ablastr PoissonSolver Constant (#4090)
• AMReX: Weekly Update (#4092)
• Remove specification of nsys version (#4048)

23.07

Dependencies

AMReX: 23.07
PICSAR (development, incl. QED): 1903ecfff51a31a321d39790af90d8520c10537e
picmistandard: release 0.25.0
openPMD-api: release 0.15.1

List of PRs merged since the last release

This list was generated with

git log 23.06.. --format='- %s'

• Remove field probe raw_fields option (#4074)
• Release 23.07 (#4088)
• Clang-tidy CI test: add some performance checks in clang-tidy CI test (#4077)
• Update Adastra documentation (#4082)
• Update LUMI documentation (#4087)
• ablastr: fix missing/superfluous #include directives (#4080)
• Add reduced diag precision input parameter (#4079)
• Update Intel compiler installation (#4081)
• Clang-tidy CI test: make bugprone checks list more compact (#4075)
• Clang-tidy CI test: add almost all missing bugprone clang-tidy checks (#4064)
• Clang-tidy CI test: add more bugprone clang-tidy checks (#4047)
• Clang-tidy CI test: add few bugprone clang-tidy checks (#4046)
• main.cpp: change warpx_amrex_init into warpx::initialization::amrex_init (#4055)
• explicitly exclude bugprone-easily-swappable-parameters check from clang-tidy CI test (#4060)
• Update GitHub actions CI test to use Ascent 0.9.2 (#4067)
• Fix max_grid_size for RZ PSATD (#4073)
• Fix clang-tidy bugprone-branch-clone warning (#4072)
• Impose t_lab in Lorentz Transformation for externally loaded particles (#3996)
• Docs: Karolina (IT4I) (#4012)
• Allow FieldProbe in RZ geometry (#4057)
• Continuous injection of moving plasma (#3958)
• Use GPU compatible kernel in sumParticleCharge (#3949)
• Docs: update openPMD tutorials link (#4061)
• Allocate fewer rho components for ES, MS, hybrid-PIC solvers (#4036)
• RigidInjection: properly transform z_inject to boosted frame (#4059)
• Fix typo in docs of hybrid PIC scheme (#4058)
• Clean up of MultiFab tagging (#4014)
• Replace unsed WARPX_DIM_2D with AMREX_SPACEDIM==2 (#4039)
• AMReX: Weekly Update (#4053)
• remove dependency of VectorPoissonSolver.H on WarpX (#4054)
• Doc: Link All Tests in Examples (#4056)
• Kernel Fusion in Reduced Diagnostics for Fields (#4050)
• Define new InjectorFlux object, and use it in AddPlasmaFlux (#4040)
• Doc: Summit SciPy -j10 (#4045)
• Adding current density to Field Reduction reduced diagnostic (#3980)
• Clang-tidy CI test: add bugprone-branch-clone check (#4030)
• refactored HybridPICModel::HybridPICSolveE to more readable (#4044)
• Doc: Summit Scipy Install (#4023)
• Remove Custom momentum and density injector (#4037)
• Explicitly check field IndexType appropriateness when using hybrid-PIC solver (#4034)
• change default current deposition algorithm to direct with hybrid-PIC solver (#4033)
• added WarpX::HybridPICDepositInitialRhoAndJ() helper function to clean up WarpX::Evolve (#4032)
• abort simulation if a user attempts to use an external field applied directly to the particles with the hybrid-PIC solver (#4020)
• Doc: HPC Machines Source Py Env (#4029)
• Doc: HPC3 (UCI) HDF5 & GPU Visibility (#4021)
• Doc: IPAC22 Tan et al. Dielectric (#4027)
• Clean up GpuArray init in ABLASTR interp modules (#4028)
• Doc: IPAC23 Paper (#4017)
• add modernize-avoid-bind check to clang-tidy CI test (#4025)
• Move MPIInitHelpers into ablastr (#4026)
• For ReducedDiags, write header on restart if file does not exist (#4022)
• Fixes to remove compilation warnings (#4015)
• Doc: HPC QED & Multi-Dim (#4013)
• Doc: HPC3 (UCI) Fix Link
• Add documentation describing handling of PICMI input (#3978)
• AMReX: Weekly Update (#4008)
• Doc: Batch System Cheat Sheets (#4011)
• Doc: HPC3 at UCI (#4010)
• Doc: Copy Code Blocks (#4004)
• add performance-faster-string-find check in clang-tidy (#4003)
• Docs: Install Dep Scripts Build Dirs (#4002)
• add performance-for-range-copy check to clang-tidy CI test (#4000)
• add readability-non-const-parameter check to clang-tidy file (#3999)
• correct seperate --> separate (#3998)
• Summit: Optimas Only builds 1hr
• Summit: Install optimas separately
• Doc: Perlmutter (NERSC) Install Helpers (#3985)
• Doc: Summit (OLCF) Quick Install + Torch (#3997)
• Generalize buffers for SyncRho, SyncCurrent, and related functions (#3995)
• Add Twiss alpha to BeamRelevant and Docs (#3993)
• Added external field loading from file to picmi.py (#3945)
• AMReX: Weekly Update (#3992)
• Fix: Unused Cost GPUClock (#3988)
• Docs: Frontier Script Details
• Doc: Frontier (OLCF) hipcc (#3986)
• Fix: 1D Abort in Kernels (#3987)
• Docs: Update OpenMP for macOS Pkg Mgs (#3990)
• Docs: Debian/Ubuntu no-MPI (#3983)
• Add Frontier Checkpointing and IO Warning (#3984)
• Add python script to update benchmarks from Azure output (#2355)
• Enforce const correctness using clang-tidy CI test (#3921)
• Docs: TAE (#3977)
• Cleanup unused parts of WarpX Python interface (#3971)
• Ohm's law solver (hybrid kinetic-fluid extension) (#3665)
• Replace amrex::Abort with WARPX_ABORT_WITH_MESSAGE (#3965)
• precommit: make sure isort output is compatible with black (#3981)
• Fix SyncCurrent and SyncRho for multi-levels (#3777)
• geometry.is_periodic: Only Warn (#3974)
• Read RZ laser files produced by lasy (#3910)
• Make sbatch command consistent with the example file (#3972)
• Doc: rocFFT 5.4+ defaults to in-memory (#3968)
• [pre-commit.ci] pre-commit autoupdate (#3970)
• Use clang-tidy in CI (#3917)
• AMReX: Weekly Update (#3969)
• Add waterbag generation in injector (#3698)

23.06

Dependencies

AMReX: 23.06
PICSAR (development, incl. QED): 1903ecfff51a31a321d39790af90d8520c10537e
picmistandard: release 0.24.0
openPMD-api: release 0.15.1

List of PRs merged since the last release

This list was generated with

git log 23.05.. --format='- %s'

• Release 23.06 (#3962)
• Fix wrong executable and missing Werror flag in CI test (#3964)
• Add CI test in single precision (#3955)
• Histogram 2D (#3883)
• RZ PSATD: do_pml_div..._cleaning not implemented, fix default (#3940)
• Add max_background_density to MCCollision (#3960)
• revert #3928 calculation of b0 in binary collisions and add comment (#3961)
• Update PICMI version (#3959)
• Update picmi interface for MCCCollisions (#3953)
• Fix: PSATD+RZ in SP (#3956)
• make narrowing conversion explicit using static_cast (#3954)
• Work-Around: I/O w/ GCC 8.3 (#3943)
• AMReX: Weekly Update (#3951)
• Doc: Update Lassen (LLNL) (#3942)
• Fix: PSATD RZ Multi-Dim CUDA Build (#3947)
• Explicitly delete NamedComponentParticleContainer's copy constructor (#3944)
• Fix bug of txye binary file reader when used with MPI (#3941)
• Sort WarpX-tests.ini file (#3935)
• Update documentation to use WarpX on LUMI supercomputer (#3934)
• CI: No Draft CodeQL (#3937)
• Multi-Dim Buildsystem Support (#3933)
• AMReX/PICSAR: Weekly Update (#3936)
• CUDA: Recommend 11.3+ (#3932)
• Doc: Summit ADIOS 2.8.1 (#3931)
• Implement legacy mode for external laser file reading (#3923)
• Doc: ux,uy,uz momenta and improving docs (#3930)
• AMReX: Weekly Update (#3926)
• Fix calculation of b0 in binary collisions (#3928)
• Remove Harris laser (#3929)
• Bug fix - PEC - Remove duplicate boundary cell updates for rho and J (#3890)
• Doc: LASY 0.1.1 (#3920)
• CMake: Simplify Lib Symlink (#3925)
• Add a link to CMake documentation in the WarpX build section (#3924)
• Doc: ux,uy,uz Momenta (#3916)
• Moving window: check pointers to F,G when applying shift (#3897)
• Fix typo in Adastra cluster documentation (#3918)
• Docs: Conda Dev w/ Boost (#3911)
• Do not duplicate protected member of base class (#3915)
• Field Gather: Generalize FGcell (#3909)
• AMReX: Weekly Update (#3907)
• Cleanup: rocFFT Includes (#3908)
• Enable field ionization from PICMI (#3298)
• ROCm 5.2+ (#3906)
• remove unnecessary #include (#3891)
• make Poisson Solver in ablastr depend only on ablastr (and AMReX) (#3892)
• fix PoyntingVec calc (#3905)
• Implement reading of laser files produced by lasy (#3871)
• More Managed Memory Fixes: Diagnostics (#3899)
• Prevent implicit capture on GPU for RZ sims (#3895)
• Change CartesianCKCAlgorithm.H (#3898)
• Fix: RTD (#3896)
• Fix: Laser-Ion Example Gather (#3894)
• Replace 3 occurrencess of NULL with std::nullptr (#3893)