The following features are not present in the object: Error in FUN(X[[i]], ...) : The number of features less than 3

[Noralii]

r$> head(exp)
g0 g1 g2 g3 g4 g5 g6 g7 g8 g9
Xkr4 0.016607731 0.008348411 0.037180628 0.011065634 0.009992582 0.018633947 0.01323550 0.198304899 0.05375092 0
Gm1992 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.00000000 0.000000000 0.00000000 0
Gm19938 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.00000000 0.007474994 0.00000000 0
Gm37381 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.01516513 0.005974447 0.00000000 0
Rp1 0.008125174 0.002699627 0.003017451 0.007414781 0.010438982 0.010809699 0.00000000 0.119315856 0.00000000 0
Sox17 0.007704003 0.005642794 0.016528204 0.002463004 0.000000000 0.002485266 0.00000000 0.015105571 0.37630455 0

r$> ResultScores_TCSS <- TCSS_Calculate(exp)
Calculating of p_val state
Warning: The following features are not present in the object: 3.60125146608182e-183, 5.53497653346473e-165, 5.34730753343821e-151, 4.27549502620644e-145, 5.02615211125825e-145, 8.60167406555396e-136, 5.40851786620913e-127, 1.19068997077625e-125, 8.23450029780421e-122, 1.72329189715848e-121, 6.50953045659488e-116, 9.42096203528522e-115, 3.47759315542753e-109, 1.74904858558302e-100, 4.30027324399049e-94, 2.42928208005206e-92, 3.40688343047345e-87, 7.11064330039181e-86, 5.61648634509633e-84, 1.95477663839588e-83, 2.28502621841094e-83, 3.50700311248705e-83, 5.06191555201893e-82, 5.52160093876287e-81, 3.28160565633143e-79, 1.95349232760361e-75, 1.91049947436344e-74, 2.0486394733104e-70, 7.89915312294608e-70, 6.29878928605757e-68, 6.40733446417092e-68, 7.6590257340692e-68, 3.10405306986315e-66, 1.11302586029001e-65, 3.92797011275931e-65, 7.25186740413988e-64, 2.88071891479033e-63, 4.59154554458811e-63, 8.60059058513536e-62, 7.1696695033137e-61, 2.44947702133067e-60, 2.0499871958469e-59, 2.2590746023 [... truncated]
Error in FUN(X[[i]], ...) : The number of features less than 3

[AweKevin]

Your input symbols are for mice, input needs human symbols.

[Bao110110]

###> sample_expression <- TCellSI::exampleSample
###> sample_expression[1:10, ]
SRR5088825 SRR5088828 SRR5088830 SRR5088833 SRR5088835
5_8S_rRNA 0.000000 0.000000 0.0000000 0.0000000 0.000000
5S_rRNA 0.000000 0.000000 0.4346853 0.0000000 0.000000
7SK 0.000000 0.000000 0.0000000 0.0000000 0.000000
A1BG 1.907599 3.284418 4.0821248 3.2864715 2.863233
A1BG-AS1 3.083914 2.021561 4.5169002 2.9347126 2.918992
A1CF 0.000000 0.000000 0.0000000 0.0000000 0.000000
A2M 9.812037 9.516751 5.7541683 6.9308912 7.394556
A2M-AS1 2.107557 1.889085 0.1596072 0.8729146 1.206896
A2ML1 0.000000 0.000000 0.0000000 0.0000000 0.000000
A2ML1-AS1 0.000000 0.000000 0.0000000 0.0000000 0.000000
###> ResultScores_TCSS <- TCSS_Calculate(sample_expression)
Calculating of p_val state
Warning: The following features are not present in the object: 0, 3.37566558923927e-305, 8.02929549989415e-304, 5.04122303111492e-302, 1.91826336836312e-298, 1.35079992484249e-297, 5.28434808698838e-297, 1.39843510276457e-296, 1.55941036605432e-295, 1.89188201003404e-294, 1.99430088239325e-292, 1.81138935270264e-287, 3.20684482165172e-287, 5.6754620913651e-287, 1.44665901898091e-286, 3.67053400968135e-277, 8.81096579952761e-275, 2.23745673830845e-272, 6.26742622664848e-271, 2.70154007114309e-270, 1.51729076960761e-265, 5.86881435710966e-259, 6.59343136234942e-259, 1.66009324794466e-255, 1.36543129318954e-254, 1.23773672539964e-252, 4.32391437084423e-251, 5.05757294896379e-248, 1.64783235170976e-246, 2.06038101477976e-245, 4.4566346794448e-244, 5.5592110289524e-242, 1.43695836910214e-241, 1.4428475327182e-238, 1.70655503557485e-238, 5.74864270270811e-237, 1.09614142313071e-236, 2.779496774877e-236, 9.80067480821648e-236, 4.14429937415972e-235, 6.67781244671845e-235, 1.10473685357728e-234, 3.2821 [... truncated]
Error in FUN(X[[i]], ...) : The number of features less than 3

###this is the example data, and the error is same

[VyvyanYjm]

###> sample_expression <- TCellSI::exampleSample ###> sample_expression[1:10, ] SRR5088825 SRR5088828 SRR5088830 SRR5088833 SRR5088835 5_8S_rRNA 0.000000 0.000000 0.0000000 0.0000000 0.000000 5S_rRNA 0.000000 0.000000 0.4346853 0.0000000 0.000000 7SK 0.000000 0.000000 0.0000000 0.0000000 0.000000 A1BG 1.907599 3.284418 4.0821248 3.2864715 2.863233 A1BG-AS1 3.083914 2.021561 4.5169002 2.9347126 2.918992 A1CF 0.000000 0.000000 0.0000000 0.0000000 0.000000 A2M 9.812037 9.516751 5.7541683 6.9308912 7.394556 A2M-AS1 2.107557 1.889085 0.1596072 0.8729146 1.206896 A2ML1 0.000000 0.000000 0.0000000 0.0000000 0.000000 A2ML1-AS1 0.000000 0.000000 0.0000000 0.0000000 0.000000 ###> ResultScores_TCSS <- TCSS_Calculate(sample_expression) Calculating of p_val state Warning: The following features are not present in the object: 0, 3.37566558923927e-305, 8.02929549989415e-304, 5.04122303111492e-302, 1.91826336836312e-298, 1.35079992484249e-297, 5.28434808698838e-297, 1.39843510276457e-296, 1.55941036605432e-295, 1.89188201003404e-294, 1.99430088239325e-292, 1.81138935270264e-287, 3.20684482165172e-287, 5.6754620913651e-287, 1.44665901898091e-286, 3.67053400968135e-277, 8.81096579952761e-275, 2.23745673830845e-272, 6.26742622664848e-271, 2.70154007114309e-270, 1.51729076960761e-265, 5.86881435710966e-259, 6.59343136234942e-259, 1.66009324794466e-255, 1.36543129318954e-254, 1.23773672539964e-252, 4.32391437084423e-251, 5.05757294896379e-248, 1.64783235170976e-246, 2.06038101477976e-245, 4.4566346794448e-244, 5.5592110289524e-242, 1.43695836910214e-241, 1.4428475327182e-238, 1.70655503557485e-238, 5.74864270270811e-237, 1.09614142313071e-236, 2.779496774877e-236, 9.80067480821648e-236, 4.14429937415972e-235, 6.67781244671845e-235, 1.10473685357728e-234, 3.2821 [... truncated] Error in FUN(X[[i]], ...) : The number of features less than 3

###this is the example data, and the error is same

Did you solve this problem now? Please add my wechat ：Y1390473501 ; I invite you to enter the exchange group to facilitate timely communication with the problem. In addition, your current problem should be a package installation problems, consider changing the environment to re-install.

[Bao110110]

###> sample_expression <- TCellSI::exampleSample ###> sample_expression[1:10, ] SRR5088825 SRR5088828 SRR5088830 SRR5088833 SRR5088835 5_8S_rRNA 0.000000 0.000000 0.0000000 0.0000000 0.000000 5S_rRNA 0.000000 0.000000 0.4346853 0.0000000 0.000000 7SK 0.000000 0.000000 0.0000000 0.0000000 0.000000 A1BG 1.907599 3.284418 4.0821248 3.2864715 2.863233 A1BG-AS1 3.083914 2.021561 4.5169002 2.9347126 2.918992 A1CF 0.000000 0.000000 0.0000000 0.0000000 0.000000 A2M 9.812037 9.516751 5.7541683 6.9308912 7.394556 A2M-AS1 2.107557 1.889085 0.1596072 0.8729146 1.206896 A2ML1 0.000000 0.000000 0.0000000 0.0000000 0.000000 A2ML1-AS1 0.000000 0.000000 0.0000000 0.0000000 0.000000 ###> ResultScores_TCSS <- TCSS_Calculate(sample_expression) Calculating of p_val state Warning: The following features are not present in the object: 0, 3.37566558923927e-305, 8.02929549989415e-304, 5.04122303111492e-302, 1.91826336836312e-298, 1.35079992484249e-297, 5.28434808698838e-297, 1.39843510276457e-296, 1.55941036605432e-295, 1.89188201003404e-294, 1.99430088239325e-292, 1.81138935270264e-287, 3.20684482165172e-287, 5.6754620913651e-287, 1.44665901898091e-286, 3.67053400968135e-277, 8.81096579952761e-275, 2.23745673830845e-272, 6.26742622664848e-271, 2.70154007114309e-270, 1.51729076960761e-265, 5.86881435710966e-259, 6.59343136234942e-259, 1.66009324794466e-255, 1.36543129318954e-254, 1.23773672539964e-252, 4.32391437084423e-251, 5.05757294896379e-248, 1.64783235170976e-246, 2.06038101477976e-245, 4.4566346794448e-244, 5.5592110289524e-242, 1.43695836910214e-241, 1.4428475327182e-238, 1.70655503557485e-238, 5.74864270270811e-237, 1.09614142313071e-236, 2.779496774877e-236, 9.80067480821648e-236, 4.14429937415972e-235, 6.67781244671845e-235, 1.10473685357728e-234, 3.2821 [... truncated] Error in FUN(X[[i]], ...) : The number of features less than 3
###this is the example data, and the error is same

Did you solve this problem now? Please add my wechat ：Y1390473501 ; I invite you to enter the exchange group to facilitate timely communication with the problem. In addition, your current problem should be a package installation problems, consider changing the environment to re-install.

thank you, have added your wechat

[Noralii]

I used the example data, but the error，but the Error in FUN(X[[i]], ...) : The number of features less than 3 still occured

[VyvyanYjm]

please add my WeChat :Y1390473501 ; I help you find the problem

…

---- Replied Message ---- | From | ***@***.***> | | Date | 09/29/2024 21:05 | | To | GuoBioinfoLab/TCellSI ***@***.***> | | Cc | JingMin ***@***.***>, Comment ***@***.***> | | Subject | Re: [GuoBioinfoLab/TCellSI] The following features are not present in the object: Error in FUN(X[[i]], ...) : The number of features less than 3 (Issue #1) | I used the example data, but the error，but the Error in FUN(X[[i]], ...) : The number of features less than 3 still occured — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: ***@***.***>