Code and data to reproduce the analysis/figures from this manuscript: Human germinal center transcriptional programs are de-synchronized in B cell lymphoma, Nature Immunology 2018
For greater simplicity, quality control was already performed on the input data for these R scripts.
All the data files needed are in the folder /data , except for the two scRNA-seq datasets.
The scRNA-seq data are available on this GEO link.
You can also download them directly:
-To download GSM3190075_humanBcells_matrixGeneCell.csv, please click through this link
-To download GSM3190076_humanFL5_matrixGeneCell.csv, please click through this link
The R scripts are ordered by Figures and by type of data (sc-qPCR and scRNA-seq). Most of the scripts can be run independently.
Please use the Issues Section for questions/issues.
cervera [at] ciml.univ-mrs.fr
milpied [at] ciml.univ-mrs.fr