diff --git a/docs/requirements.txt b/docs/requirements.txt index 22a0694b..63c82205 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -1,35 +1,37 @@ alabaster==0.7.13 ; python_version >= "3.8" and python_version < "3.11" -anyio==3.7.1 ; python_version >= "3.8" and python_version < "3.11" -appnope==0.1.3 ; python_version >= "3.8" and python_version < "3.11" and platform_system == "Darwin" or python_version >= "3.8" and python_version < "3.11" and sys_platform == "darwin" +anyio==4.0.0 ; python_version >= "3.8" and python_version < "3.11" +appnope==0.1.3 ; python_version >= "3.8" and python_version < "3.11" and (platform_system == "Darwin" or sys_platform == "darwin") argon2-cffi-bindings==21.2.0 ; python_version >= "3.8" and python_version < "3.11" -argon2-cffi==21.3.0 ; python_version >= "3.8" and python_version < "3.11" -arrow==1.2.3 ; python_version >= "3.8" and python_version < "3.11" -asciitree==0.3.3 ; python_version >= "3.8" and python_version < "3.11" and platform_machine == "x86_64" or python_version >= "3.8" and python_version < "3.11" and platform_machine == "AMD64" +argon2-cffi==23.1.0 ; python_version >= "3.8" and python_version < "3.11" +arrow==1.3.0 ; python_version >= "3.8" and python_version < "3.11" +asciitree==0.3.3 ; python_version >= "3.8" and python_version < "3.11" and (platform_machine == "x86_64" or platform_machine == "AMD64") ase==3.22.1 ; python_version >= "3.8" and python_version < "3.11" asteval==0.9.31 ; python_version >= "3.8" and python_version < "3.11" astropy==5.2.2 ; python_version >= "3.8" and python_version < "3.11" -asttokens==2.2.1 ; python_version >= "3.8" and python_version < "3.11" +asttokens==2.4.1 ; python_version >= "3.8" and python_version < "3.11" +async-lru==2.0.4 ; python_version >= "3.8" and python_version < "3.11" attrs==23.1.0 ; python_version >= "3.8" and python_version < "3.11" -babel==2.12.1 ; python_version >= "3.8" and python_version < "3.11" +babel==2.13.1 ; python_version >= "3.8" and python_version < "3.11" backcall==0.2.0 ; python_version >= "3.8" and python_version < "3.11" +backports-zoneinfo==0.2.1 ; python_version >= "3.8" and python_version < "3.9" beautifulsoup4==4.12.2 ; python_version >= "3.8" and python_version < "3.11" -bleach==6.0.0 ; python_version >= "3.8" and python_version < "3.11" +bleach==6.1.0 ; python_version >= "3.8" and python_version < "3.11" bokeh==2.4.3 ; python_version >= "3.8" and python_version < "3.11" cattrs==23.1.2 ; python_version >= "3.8" and python_version < "3.11" certifi==2023.7.22 ; python_version >= "3.8" and python_version < "3.11" -cffi==1.15.1 ; python_version >= "3.8" and python_version < "3.11" -charset-normalizer==3.2.0 ; python_version >= "3.8" and python_version < "3.11" -click==8.1.6 ; python_version >= "3.8" and python_version < "3.11" -cloudpickle==2.2.1 ; python_version >= "3.8" and python_version < "3.11" -colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.11" and platform_system == "Windows" or python_version >= "3.8" and python_version < "3.11" and sys_platform == "win32" +cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.11" +charset-normalizer==3.3.1 ; python_version >= "3.8" and python_version < "3.11" +click==8.1.7 ; python_version >= "3.8" and python_version < "3.11" +cloudpickle==3.0.0 ; python_version >= "3.8" and python_version < "3.11" +colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.11" and (platform_system == "Windows" or sys_platform == "win32") comm==0.1.4 ; python_version >= "3.8" and python_version < "3.11" commonmark==0.9.1 ; python_version >= "3.8" and python_version < "3.11" -contourpy==1.1.0 ; python_version >= "3.8" and python_version < "3.11" +contourpy==1.1.1 ; python_version >= "3.8" and python_version < "3.11" cramjam==2.7.0 ; python_version >= "3.8" and python_version < "3.11" -cycler==0.11.0 ; python_version >= "3.8" and python_version < "3.11" +cycler==0.12.1 ; python_version >= "3.8" and python_version < "3.11" dask==2022.12.1 ; python_version >= "3.8" and python_version < "3.11" dask[array]==2022.12.1 ; python_version >= "3.8" and python_version < "3.11" -debugpy==1.6.7.post1 ; python_version >= "3.8" and python_version < "3.11" +debugpy==1.8.0 ; python_version >= "3.8" and python_version < "3.11" decorator==5.1.1 ; python_version >= "3.8" and python_version < "3.11" defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.11" diffpy-structure==3.1.0 ; python_version >= "3.8" and python_version < "3.11" @@ -37,61 +39,60 @@ diffsims==0.5.2 ; python_version >= "3.8" and python_version < "3.11" dill==0.3.7 ; python_version >= "3.8" and python_version < "3.11" docutils==0.18.1 ; python_version >= "3.8" and python_version < "3.11" entrypoints==0.4 ; python_version >= "3.8" and python_version < "3.11" -exceptiongroup==1.1.2 ; python_version >= "3.8" and python_version < "3.11" -executing==1.2.0 ; python_version >= "3.8" and python_version < "3.11" +exceptiongroup==1.1.3 ; python_version >= "3.8" and python_version < "3.11" +executing==2.0.0 ; python_version >= "3.8" and python_version < "3.11" fabio==2023.6.0 ; python_version >= "3.8" and python_version < "3.11" fastdtw==0.3.4 ; python_version >= "3.8" and python_version < "3.11" -fasteners==0.18 ; python_version >= "3.8" and python_version < "3.11" and platform_machine == "x86_64" or python_version >= "3.8" and python_version < "3.11" and platform_machine == "AMD64" -fastjsonschema==2.18.0 ; python_version >= "3.8" and python_version < "3.11" +fasteners==0.19 ; python_version >= "3.8" and python_version < "3.11" and (platform_machine == "x86_64" or platform_machine == "AMD64") +fastjsonschema==2.18.1 ; python_version >= "3.8" and python_version < "3.11" fastparquet==0.8.3 ; python_version >= "3.8" and python_version < "3.11" flatdict==4.0.1 ; python_version >= "3.8" and python_version < "3.11" -fonttools==4.42.0 ; python_version >= "3.8" and python_version < "3.11" +fonttools==4.43.1 ; python_version >= "3.8" and python_version < "3.11" fqdn==1.5.1 ; python_version >= "3.8" and python_version < "3.11" -fsspec==2023.6.0 ; python_version >= "3.8" and python_version < "3.11" -furo==2023.7.26 ; python_version >= "3.8" and python_version < "3.11" +fsspec==2023.10.0 ; python_version >= "3.8" and python_version < "3.11" +furo==2023.9.10 ; python_version >= "3.8" and python_version < "3.11" future==0.18.3 ; python_version >= "3.8" and python_version < "3.11" -gitdb==4.0.10 ; python_version >= "3.8" and python_version < "3.11" -gitpython==3.1.32 ; python_version >= "3.8" and python_version < "3.11" -h5grove==1.3.0 ; python_version >= "3.8" and python_version < "3.11" -h5py==3.9.0 ; python_version >= "3.8" and python_version < "3.11" -hyperspy==1.7.5 ; python_version >= "3.8" and python_version < "3.11" +gitdb==4.0.11 ; python_version >= "3.8" and python_version < "3.11" +gitpython==3.1.40 ; python_version >= "3.8" and python_version < "3.11" +h5py==3.10.0 ; python_version >= "3.8" and python_version < "3.11" +hyperspy==1.7.4 ; python_version >= "3.8" and python_version < "3.11" idna==3.4 ; python_version >= "3.8" and python_version < "3.11" ifes-apt-tc-data-modeling==0.0.9 ; python_version >= "3.8" and python_version < "3.11" -imageio==2.27.0 ; python_version >= "3.8" and python_version < "3.11" +imageio==2.31.6 ; python_version >= "3.8" and python_version < "3.11" imagesize==1.4.1 ; python_version >= "3.8" and python_version < "3.11" importlib-metadata==6.8.0 ; python_version >= "3.8" and python_version < "3.11" -importlib-resources==6.0.1 ; python_version >= "3.8" and python_version < "3.10" -ipykernel==6.25.1 ; python_version >= "3.8" and python_version < "3.11" -ipykernel[notebook]==6.25.1 ; python_version >= "3.8" and python_version < "3.11" +importlib-resources==6.1.0 ; python_version >= "3.8" and python_version < "3.10" +ipykernel==6.26.0 ; python_version >= "3.8" and python_version < "3.11" +ipykernel[notebook]==6.26.0 ; python_version >= "3.8" and python_version < "3.11" ipympl==0.9.3 ; python_version >= "3.8" and python_version < "3.11" ipyparallel==8.6.1 ; python_version >= "3.8" and python_version < "3.11" ipython-genutils==0.2.0 ; python_version >= "3.8" and python_version < "3.11" -ipython==8.12.2 ; python_version >= "3.8" and python_version < "3.11" -ipywidgets==7.8.0 ; python_version >= "3.8" and python_version < "3.11" +ipython==8.12.3 ; python_version >= "3.8" and python_version < "3.11" +ipywidgets==8.1.1 ; python_version >= "3.8" and python_version < "3.11" isoduration==20.11.0 ; python_version >= "3.8" and python_version < "3.11" -jedi==0.19.0 ; python_version >= "3.8" and python_version < "3.11" +jedi==0.19.1 ; python_version >= "3.8" and python_version < "3.11" jinja2==3.1.2 ; python_version >= "3.8" and python_version < "3.11" joblib==1.3.2 ; python_version >= "3.8" and python_version < "3.11" json5==0.9.14 ; python_version >= "3.8" and python_version < "3.11" jsonpointer==2.4 ; python_version >= "3.8" and python_version < "3.11" jsonschema-specifications==2023.7.1 ; python_version >= "3.8" and python_version < "3.11" -jsonschema==4.19.0 ; python_version >= "3.8" and python_version < "3.11" -jsonschema[format-nongpl]==4.19.0 ; python_version >= "3.8" and python_version < "3.11" -jupyter-client==8.3.0 ; python_version >= "3.8" and python_version < "3.11" +jsonschema==4.19.1 ; python_version >= "3.8" and python_version < "3.11" +jsonschema[format-nongpl]==4.19.1 ; python_version >= "3.8" and python_version < "3.11" +jupyter-client==8.5.0 ; python_version >= "3.8" and python_version < "3.11" jupyter-console==6.6.3 ; python_version >= "3.8" and python_version < "3.11" -jupyter-core==5.3.1 ; python_version >= "3.8" and python_version < "3.11" -jupyter-events==0.7.0 ; python_version >= "3.8" and python_version < "3.11" +jupyter-core==5.4.0 ; python_version >= "3.8" and python_version < "3.11" +jupyter-events==0.8.0 ; python_version >= "3.8" and python_version < "3.11" +jupyter-lsp==2.2.0 ; python_version >= "3.8" and python_version < "3.11" jupyter-server-terminals==0.4.4 ; python_version >= "3.8" and python_version < "3.11" -jupyter-server==2.7.0 ; python_version >= "3.8" and python_version < "3.11" +jupyter-server==2.9.1 ; python_version >= "3.8" and python_version < "3.11" jupyter[notebook]==1.0.0 ; python_version >= "3.8" and python_version < "3.11" -jupyterlab-h5web==10.0.0 ; python_version >= "3.8" and python_version < "3.11" jupyterlab-pygments==0.2.2 ; python_version >= "3.8" and python_version < "3.11" -jupyterlab-server==2.24.0 ; python_version >= "3.8" and python_version < "3.11" -jupyterlab-widgets==1.1.5 ; python_version >= "3.8" and python_version < "3.11" -jupyterlab==3.5.3 ; python_version >= "3.8" and python_version < "3.11" +jupyterlab-server==2.25.0 ; python_version >= "3.8" and python_version < "3.11" +jupyterlab-widgets==3.0.9 ; python_version >= "3.8" and python_version < "3.11" +jupyterlab==4.0.7 ; python_version >= "3.8" and python_version < "3.11" kikuchipy==0.8.7 ; python_version >= "3.8" and python_version < "3.11" -kiwisolver==1.4.4 ; python_version >= "3.8" and python_version < "3.11" -lark==1.1.7 ; python_version >= "3.8" and python_version < "3.11" +kiwisolver==1.4.5 ; python_version >= "3.8" and python_version < "3.11" +lark==1.1.8 ; python_version >= "3.8" and python_version < "3.11" lazy-loader==0.3 ; python_version >= "3.8" and python_version < "3.11" llvmlite==0.38.1 ; python_version >= "3.8" and python_version < "3.11" lmfit==1.2.2 ; python_version >= "3.8" and python_version < "3.11" @@ -99,83 +100,89 @@ locket==1.0.0 ; python_version >= "3.8" and python_version < "3.11" markupsafe==2.1.3 ; python_version >= "3.8" and python_version < "3.11" matplotlib-inline==0.1.6 ; python_version >= "3.8" and python_version < "3.11" matplotlib-scalebar==0.8.1 ; python_version >= "3.8" and python_version < "3.11" -matplotlib==3.7.2 ; python_version >= "3.8" and python_version < "3.11" -mistune==3.0.1 ; python_version >= "3.8" and python_version < "3.11" +matplotlib==3.7.3 ; python_version >= "3.8" and python_version < "3.11" +mistune==3.0.2 ; python_version >= "3.8" and python_version < "3.11" mpmath==1.3.0 ; python_version >= "3.8" and python_version < "3.11" natsort==8.4.0 ; python_version >= "3.8" and python_version < "3.11" -nbclassic==1.0.0 ; python_version >= "3.8" and python_version < "3.11" nbclient==0.8.0 ; python_version >= "3.8" and python_version < "3.11" -nbconvert==7.7.3 ; python_version >= "3.8" and python_version < "3.11" +nbconvert==7.9.2 ; python_version >= "3.8" and python_version < "3.11" nbformat==5.9.2 ; python_version >= "3.8" and python_version < "3.11" -nest-asyncio==1.5.7 ; python_version >= "3.8" and python_version < "3.11" +nest-asyncio==1.5.8 ; python_version >= "3.8" and python_version < "3.11" networkx==3.1 ; python_version >= "3.8" and python_version < "3.11" +niondata==0.15.3 ; python_version >= "3.8" and python_version < "3.11" +nionswift-io==0.15.1 ; python_version >= "3.8" and python_version < "3.11" +nionswift==0.16.8 ; python_version >= "3.8" and python_version < "3.11" +nionui==0.6.10 ; python_version >= "3.8" and python_version < "3.11" +nionutils==0.4.6 ; python_version >= "3.8" and python_version < "3.11" notebook-shim==0.2.3 ; python_version >= "3.8" and python_version < "3.11" -notebook==6.5.4 ; python_version >= "3.8" and python_version < "3.11" +notebook==7.0.6 ; python_version >= "3.8" and python_version < "3.11" numba==0.55.2 ; python_version >= "3.8" and python_version < "3.11" -numcodecs==0.11.0 ; python_version >= "3.8" and python_version < "3.11" and platform_machine == "x86_64" or python_version >= "3.8" and python_version < "3.11" and platform_machine == "AMD64" -numexpr==2.8.5 ; python_version >= "3.8" and python_version < "3.11" +numcodecs==0.12.1 ; python_version >= "3.8" and python_version < "3.11" and (platform_machine == "x86_64" or platform_machine == "AMD64") +numexpr==2.8.6 ; python_version >= "3.8" and python_version < "3.11" numpy-quaternion==2022.4.3 ; python_version >= "3.8" and python_version < "3.11" -numpy==1.21.6 ; python_version < "3.11" and python_version >= "3.8" +numpy==1.22.4 ; python_version >= "3.8" and python_version < "3.11" opencv-python==4.8.0.74 ; python_version >= "3.8" and python_version < "3.11" orix==0.11.1 ; python_version >= "3.8" and python_version < "3.11" -orjson==3.9.4 ; python_version >= "3.8" and python_version < "3.11" overrides==7.4.0 ; python_version >= "3.8" and python_version < "3.11" -packaging==23.1 ; python_version >= "3.8" and python_version < "3.11" +packaging==23.2 ; python_version >= "3.8" and python_version < "3.11" pandas==1.5.3 ; python_version >= "3.8" and python_version < "3.11" pandocfilters==1.5.0 ; python_version >= "3.8" and python_version < "3.11" parso==0.8.3 ; python_version >= "3.8" and python_version < "3.11" -partd==1.4.0 ; python_version >= "3.8" and python_version < "3.11" +partd==1.4.1 ; python_version >= "3.8" and python_version < "3.11" pexpect==4.8.0 ; python_version >= "3.8" and python_version < "3.11" and sys_platform != "win32" photutils==1.8.0 ; python_version >= "3.8" and python_version < "3.11" pickleshare==0.7.5 ; python_version >= "3.8" and python_version < "3.11" -pillow==10.0.0 ; python_version >= "3.8" and python_version < "3.11" +pillow==10.0.1 ; python_version >= "3.8" and python_version < "3.11" pint==0.21.1 ; python_version >= "3.8" and python_version < "3.11" pkgutil-resolve-name==1.3.10 ; python_version >= "3.8" and python_version < "3.9" -platformdirs==3.10.0 ; python_version >= "3.8" and python_version < "3.11" -pooch==1.7.0 ; python_version >= "3.8" and python_version < "3.11" -prettytable==3.8.0 ; python_version >= "3.8" and python_version < "3.11" +platformdirs==3.11.0 ; python_version >= "3.8" and python_version < "3.11" +pooch==1.8.0 ; python_version >= "3.8" and python_version < "3.11" +prettytable==3.9.0 ; python_version >= "3.8" and python_version < "3.11" prometheus-client==0.17.1 ; python_version >= "3.8" and python_version < "3.11" prompt-toolkit==3.0.39 ; python_version >= "3.8" and python_version < "3.11" -psutil==5.9.5 ; python_version >= "3.8" and python_version < "3.11" -ptyprocess==0.7.0 ; python_version >= "3.8" and python_version < "3.11" and sys_platform != "win32" or python_version >= "3.8" and python_version < "3.11" and os_name != "nt" +psutil==5.9.6 ; python_version >= "3.8" and python_version < "3.11" +ptyprocess==0.7.0 ; python_version >= "3.8" and python_version < "3.11" and (sys_platform != "win32" or os_name != "nt") pure-eval==0.2.2 ; python_version >= "3.8" and python_version < "3.11" +pyarrow==13.0.0 ; python_version >= "3.8" and python_version < "3.11" pycifrw==4.4.5 ; python_version >= "3.8" and python_version < "3.11" pycparser==2.21 ; python_version >= "3.8" and python_version < "3.11" pyerfa==2.0.0.3 ; python_version >= "3.8" and python_version < "3.11" -pyfai==2023.5.0 ; python_version >= "3.8" and python_version < "3.11" +pyfai==2023.9.0 ; python_version >= "3.8" and python_version < "3.11" pygments==2.16.1 ; python_version >= "3.8" and python_version < "3.11" -pynxtools==0.0.2 ; python_version >= "3.8" and python_version < "3.11" -pyparsing==3.0.9 ; python_version >= "3.8" and python_version < "3.11" +pynxtools==0.0.5 ; python_version >= "3.8" and python_version < "3.11" +pyparsing==3.1.1 ; python_version >= "3.8" and python_version < "3.11" python-dateutil==2.8.2 ; python_version >= "3.8" and python_version < "3.11" python-json-logger==2.0.7 ; python_version >= "3.8" and python_version < "3.11" -pytz==2023.3 ; python_version >= "3.8" and python_version < "3.11" +pytz-deprecation-shim==0.1.0.post0 ; python_version >= "3.8" and python_version < "3.11" +pytz==2023.3.post1 ; python_version >= "3.8" and python_version < "3.11" pywavelets==1.4.1 ; python_version >= "3.8" and python_version < "3.11" pywin32==306 ; sys_platform == "win32" and platform_python_implementation != "PyPy" and python_version >= "3.8" and python_version < "3.11" -pywinpty==2.0.11 ; python_version >= "3.8" and python_version < "3.11" and os_name == "nt" +pywinpty==2.0.12 ; python_version >= "3.8" and python_version < "3.11" and os_name == "nt" pyxem==0.15.1 ; python_version >= "3.8" and python_version < "3.11" pyyaml==6.0.1 ; python_version >= "3.8" and python_version < "3.11" pyzmq==25.1.1 ; python_version >= "3.8" and python_version < "3.11" -qtconsole==5.4.3 ; python_version >= "3.8" and python_version < "3.11" -qtpy==2.3.1 ; python_version >= "3.8" and python_version < "3.11" -radioactivedecay==0.4.20 ; python_version >= "3.8" and python_version < "3.11" +qtconsole==5.4.4 ; python_version >= "3.8" and python_version < "3.11" +qtpy==2.4.1 ; python_version >= "3.8" and python_version < "3.11" +radioactivedecay==0.4.21 ; python_version >= "3.8" and python_version < "3.11" recommonmark==0.7.1 ; python_version >= "3.8" and python_version < "3.11" referencing==0.30.2 ; python_version >= "3.8" and python_version < "3.11" requests-cache==1.1.0 ; python_version >= "3.8" and python_version < "3.11" requests==2.31.0 ; python_version >= "3.8" and python_version < "3.11" rfc3339-validator==0.1.4 ; python_version >= "3.8" and python_version < "3.11" rfc3986-validator==0.1.1 ; python_version >= "3.8" and python_version < "3.11" -rpds-py==0.9.2 ; python_version >= "3.8" and python_version < "3.11" +rpds-py==0.10.6 ; python_version >= "3.8" and python_version < "3.11" scikit-image==0.21.0 ; python_version >= "3.8" and python_version < "3.11" -scikit-learn==1.3.0 ; python_version >= "3.8" and python_version < "3.11" +scikit-learn==1.3.2 ; python_version >= "3.8" and python_version < "3.11" scipy==1.10.1 ; python_version >= "3.8" and python_version < "3.11" send2trash==1.8.2 ; python_version >= "3.8" and python_version < "3.11" -setuptools==68.0.0 ; python_version >= "3.8" and python_version < "3.11" +setuptools-scm==8.0.4 ; python_version >= "3.8" and python_version < "3.11" +setuptools==68.2.2 ; python_version >= "3.8" and python_version < "3.11" silx==1.1.2 ; python_version >= "3.8" and python_version < "3.11" six==1.16.0 ; python_version >= "3.8" and python_version < "3.11" -smmap==5.0.0 ; python_version >= "3.8" and python_version < "3.11" +smmap==5.0.1 ; python_version >= "3.8" and python_version < "3.11" sniffio==1.3.0 ; python_version >= "3.8" and python_version < "3.11" snowballstemmer==2.2.0 ; python_version >= "3.8" and python_version < "3.11" -soupsieve==2.4.1 ; python_version >= "3.8" and python_version < "3.11" +soupsieve==2.5 ; python_version >= "3.8" and python_version < "3.11" sparse==0.14.0 ; python_version >= "3.8" and python_version < "3.11" sphinx-autodoc-typehints[docs]==1.24.0 ; python_version >= "3.8" and python_version < "3.11" sphinx-basic-ng==1.0.0b2 ; python_version >= "3.8" and python_version < "3.11" @@ -191,7 +198,7 @@ sphinxcontrib-jsmath==1.0.1 ; python_version >= "3.8" and python_version < "3.11 sphinxcontrib-qthelp==1.0.3 ; python_version >= "3.8" and python_version < "3.11" sphinxcontrib-serializinghtml==1.1.5 ; python_version >= "3.8" and python_version < "3.11" sphinxcontrib-websupport==1.2.4 ; python_version >= "3.8" and python_version < "3.11" -stack-data==0.6.2 ; python_version >= "3.8" and python_version < "3.11" +stack-data==0.6.3 ; python_version >= "3.8" and python_version < "3.11" symmetrize==0.5.5 ; python_version >= "3.8" and python_version < "3.11" sympy==1.12 ; python_version >= "3.8" and python_version < "3.11" terminado==0.17.1 ; python_version >= "3.8" and python_version < "3.11" @@ -201,22 +208,25 @@ tinycss2==1.2.1 ; python_version >= "3.8" and python_version < "3.11" tomli==2.0.1 ; python_version >= "3.8" and python_version < "3.11" tomlkit[docs]==0.12.1 ; python_version >= "3.8" and python_version < "3.11" toolz==0.12.0 ; python_version >= "3.8" and python_version < "3.11" -tornado==6.3.2 ; python_version >= "3.8" and python_version < "3.11" +tornado==6.3.3 ; python_version >= "3.8" and python_version < "3.11" tqdm==4.66.1 ; python_version >= "3.8" and python_version < "3.11" -traitlets==5.9.0 ; python_version >= "3.8" and python_version < "3.11" -traits==6.4.2 ; python_version >= "3.8" and python_version < "3.11" +traitlets==5.12.0 ; python_version >= "3.8" and python_version < "3.11" +traits==6.4.3 ; python_version >= "3.8" and python_version < "3.11" transforms3d==0.4.1 ; python_version >= "3.8" and python_version < "3.11" -typing-extensions==4.7.1 ; python_version >= "3.8" and python_version < "3.11" +types-python-dateutil==2.8.19.14 ; python_version >= "3.8" and python_version < "3.11" +typing-extensions==4.8.0 ; python_version >= "3.8" and python_version < "3.11" +tzdata==2023.3 ; python_version >= "3.8" and python_version < "3.11" +tzlocal==4.3 ; python_version >= "3.8" and python_version < "3.11" uncertainties==3.1.7 ; python_version >= "3.8" and python_version < "3.11" uri-template==1.3.0 ; python_version >= "3.8" and python_version < "3.11" url-normalize==1.4.3 ; python_version >= "3.8" and python_version < "3.11" -urllib3==2.0.4 ; python_version >= "3.8" and python_version < "3.11" -wcwidth==0.2.6 ; python_version >= "3.8" and python_version < "3.11" +urllib3==2.0.7 ; python_version >= "3.8" and python_version < "3.11" +wcwidth==0.2.8 ; python_version >= "3.8" and python_version < "3.11" webcolors==1.13 ; python_version >= "3.8" and python_version < "3.11" webencodings==0.5.1 ; python_version >= "3.8" and python_version < "3.11" -websocket-client==1.6.1 ; python_version >= "3.8" and python_version < "3.11" -widgetsnbextension==3.6.5 ; python_version >= "3.8" and python_version < "3.11" +websocket-client==1.6.4 ; python_version >= "3.8" and python_version < "3.11" +widgetsnbextension==4.0.9 ; python_version >= "3.8" and python_version < "3.11" xarray==0.20.2 ; python_version >= "3.8" and python_version < "3.11" -zarr==2.16.0 ; python_version >= "3.8" and python_version < "3.11" and platform_machine == "x86_64" or python_version >= "3.8" and python_version < "3.11" and platform_machine == "AMD64" +zarr==2.16.1 ; python_version >= "3.8" and python_version < "3.11" and (platform_machine == "x86_64" or platform_machine == "AMD64") zipfile37==0.1.3 ; python_version >= "3.8" and python_version < "3.11" -zipp==3.16.2 ; python_version >= "3.8" and python_version < "3.11" +zipp==3.17.0 ; python_version >= "3.8" and python_version < "3.11" diff --git a/poetry.lock b/poetry.lock index be700b9e..b5466c9d 100644 --- a/poetry.lock +++ b/poetry.lock @@ -221,20 +221,21 @@ test-all = ["coverage[toml]", "ipython (>=4.2)", "objgraph", "pytest (>=7.0)", " [[package]] name = "asttokens" -version = "2.4.0" +version = "2.4.1" description = "Annotate AST trees with source code positions" optional = false python-versions = "*" files = [ - {file = "asttokens-2.4.0-py2.py3-none-any.whl", hash = "sha256:cf8fc9e61a86461aa9fb161a14a0841a03c405fa829ac6b202670b3495d2ce69"}, - {file = "asttokens-2.4.0.tar.gz", hash = "sha256:2e0171b991b2c959acc6c49318049236844a5da1d65ba2672c4880c1c894834e"}, + {file = "asttokens-2.4.1-py2.py3-none-any.whl", hash = "sha256:051ed49c3dcae8913ea7cd08e46a606dba30b79993209636c4875bc1d637bc24"}, + {file = "asttokens-2.4.1.tar.gz", hash = "sha256:b03869718ba9a6eb027e134bfdf69f38a236d681c83c160d510768af11254ba0"}, ] [package.dependencies] six = ">=1.12.0" [package.extras] -test = ["astroid", "pytest"] +astroid = ["astroid (>=1,<2)", "astroid (>=2,<4)"] +test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"] [[package]] name = "async-lru" diff --git a/tests/data/config/config_local.yaml b/tests/data/config/config_local.yaml deleted file mode 100644 index 05de06b1..00000000 --- a/tests/data/config/config_local.yaml +++ /dev/null @@ -1,180 +0,0 @@ -core: - loader: mpes - use_copy_tool: True - copy_tool_source: "/mnt/pcshare/" - copy_tool_dest: "/scratch/localDataStore/" - copy_tool_kwds: - ntasks: 20 - gid: 5050 - -dataframe: - hdf5_groupnames: ["Stream_0", "Stream_1", "Stream_2", "Stream_4"] - hdf5_aliases: - Stream_0: "X" - Stream_1: "Y" - Stream_2: "t" - Stream_4: "ADC" - time_stamp_alias: "timeStamps" - ms_markers_group: "msMarkers" - first_event_time_stamp_key: "FirstEventTimeStamp" - jitter_cols: ["X", "Y", "t", "ADC"] - x_column: "X" - y_column: "Y" - tof_column: "t" - corrected_tof_column: "tm" - adc_column: "ADC" - energy_column: "E" - corrected_x_column: "Xm" - corrected_y_column: "Ym" - kx_column: "kx" - ky_column: "ky" - delay_column: "delay" - tof_binwidth: 4.125e-12 - tof_binning: 2 - -energy: - bins: 1000 - ranges: [64000, 69000] - bias_key: "@KTOF:Lens:Sample:V" - normalize: True - normalize_span: 7 - normalize_order: 1 - fastdtw_radius: 2 - peak_window: 7 - calibration_method: "lmfit" - energy_scale: "kinetic" - tof_fermi: 132250 - x_width: [-20, 20] - y_width: [-20, 20] - tof_width: [-300, 500] - color_clip: 300 - correction: - correction_type: "Lorentzian" - amplitude: 2.5 - center: [730.0, 730.0] - kwds: - gamma: 920.0 - calibration: - d: 1.058206295066418 - t0: 7.684410678887588e-07 - E0: -30.440035779171833 - energy_scale: "kinetic" - -momentum: - axes: ["@x_column", "@y_column", "@tof_column"] - bins: [512, 512, 300] - ranges: [[-256, 1792], [-256, 1792], [66000, 68000]] - detector_ranges: [[0, 2048], [0, 2048]] - center_pixel: [256, 256] - sigma: 5 - fwhm: 8 - sigma_radius: 1 - center_det: "centroidnn" - calibration: - coeffs: [0.012389400615413859, 0.012389400615413859] - x_center: 256.0 - y_center: 256.0 - rstart: -256. - cstart: -256. - rstep: 4.0 - cstep: 4.0 - dfield_file: "../tests/data/config/dfield.npy" - -delay: - adc_range: [1900, 25600] - adc_binning: 2 - p1_key: "@trARPES:DelayStage:p1" - p2_key: "@trARPES:DelayStage:p2" - t0_key: "@trARPES:DelayStage:t0" - -binning: - hist_mode: "numba" - mode: "fast" - pbar: True - num_cores: 20 - threads_per_worker: 4 - threadpool_API: "blas" - -histogram: - bins: [80, 80, 80, 80] - axes: ["X", "Y", "t", "ADC"] - ranges: [[0, 1800], [0, 1800], [65000, 69000], [0, 9000], ] - -metadata: - epics_pvs: ["KTOF:Lens:Extr:I", "trARPES:Carving:TEMP_RBV", "trARPES:XGS600:PressureAC:P_RD", "KTOF:Lens:UDLD:V", "KTOF:Lens:Sample:V", "KTOF:Apertures:m1.RBV", "KTOF:Apertures:m2.RBV", "KTOF:Apertures:m3.RBV", "trARPES:Carving:TRX.RBV", "trARPES:Carving:TRY.RBV", "trARPES:Carving:TRZ.RBV", "trARPES:Carving:THT.RBV", "trARPES:Carving:PHI.RBV", "trARPES:Carving:OMG.RBV"] - fa_in_channel: 'KTOF:Apertures:m1.RBV' - fa_hor_channel: 'KTOF:Apertures:m2.RBV' - ca_in_channel: 'KTOF:Apertures:m3.RBV' - aperture_config: - "2018-01-23T19:35:15": - fa_size: - 750.: [[-3.0, -1.4], [-5.4, -4.6]] - grid: [[-3.0, -1.4], [0.15, 1.75]] - 1500.: [[-3.0, -1.4], [6.25, 7.75]] - 200.: [[3.3, 4.4], [-5.4, -4.6]] - 500.: [[3.3, 4.4], [0.15, 1.75]] - 1000.: [[3.3, 4.4], [6.25, 7.75]] - 20.: [[9.6, 10.1], [-5.4, -4.6]] - 50.: [[9.6, 10.1], [0.15, 1.75]] - 100.: [[9.6, 10.1], [6.25, 7.75]] - open: [[-15, -9.0], [-15, -8.9]] - ca_size: - 50.: [8.0, 8.4] - 200.: [-0.5, -0.9] - 100: [3.4, 3.8] - grid: [-5.3, -5.9] - open: [-12.0, -8] - "2020-01-23T19:35:15": - fa_size: - 750.: [[-6.2, -4.8], [5.0, 6.0]] - grid: [[-6.2, -4.8], [-0.7, -0.3]] - 500.: [[-6.2, -4.8], [-7.0, -6.0]] - 200.: [[0.5, 0.9], [-0.7, -0.3]] - 100.: [[0.5, 0.9], [-7.0, -6.0]] - 300.: [[0.5, 0.9], [5.0, 6.0]] - 10.: [[6.5, 6.9], [-7.0, -6.0]] - 20.: [[6.5, 6.9], [-0.7, -0.3]] - 50.: [[6.5, 6.9], [5.0, 6.0]] - open: [[-15, -8.5], [-15, -8.9]] - ca_size: - 50.: [9.0, 11.0] - 300.: [-0.1, 0.1] - 200.: [0.7, 1.5] - 100: [5.1, 5.9] - grid: [-5.5, -5.2] - open: [-15, -8.5] - lens_mode_config: - "6kV_kmodem4.0_20VTOF_v3.sav": - Extr: 6000.0 - UCA: 1200 - UFA: 600.0 - Z1: 2452.9 - Z2: 1489.9 - A: 420.07 - B: 2494.8 - C: 489.2 - D: 228.05 - E: 113.82 - F: 54.232 - G: 20.0 - H: 25.5 - I: 36.0 - TOF: 20.0 - MCPfront: 20.0 - "6kV_kmodem4.0_30VTOF_453ns_focus.sav": - Extr: 6000.0 - UCA: 1200 - UFA: 600.0 - Z1: 2452.9 - Z2: 1489.9 - A: 403.07 - B: 2500 - C: 422.25 - D: 208.88 - E: 199.49 - F: 68.735 - G: 30.0 - H: 30.0 - I: 44.5 - TOF: 30.0 - MCPfront: 30.0