From 40c5ded5830812b3501374b386d09308551dcaa6 Mon Sep 17 00:00:00 2001 From: rettigl Date: Mon, 4 Nov 2024 11:32:00 +0100 Subject: [PATCH 1/6] update lockfile and poetry version in workflows --- .github/workflows/documentation.yml | 2 +- .github/workflows/linting.yml | 2 +- .github/workflows/release.yml | 4 +- .github/workflows/testing_coverage.yml | 2 +- .github/workflows/testing_multiversion.yml | 2 +- .github/workflows/update_dependencies.yml | 2 +- poetry.lock | 768 +++++++++++---------- 7 files changed, 400 insertions(+), 382 deletions(-) diff --git a/.github/workflows/documentation.yml b/.github/workflows/documentation.yml index a3a03c3..9d54000 100644 --- a/.github/workflows/documentation.yml +++ b/.github/workflows/documentation.yml @@ -47,7 +47,7 @@ jobs: uses: packetcoders/action-setup-cache-python-poetry@main with: python-version: 3.8 - poetry-version: 1.2.2 + poetry-version: 1.8.4 - name: Install notebook dependencies run: poetry install -E notebook --with docs diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml index b910815..98b3757 100644 --- a/.github/workflows/linting.yml +++ b/.github/workflows/linting.yml @@ -28,7 +28,7 @@ jobs: uses: packetcoders/action-setup-cache-python-poetry@main with: python-version: 3.8 - poetry-version: 1.2.2 + poetry-version: 1.8.4 # Linting steps, execute all linters even if one fails - name: ruff diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index 0843b0b..e8ecf23 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -34,7 +34,7 @@ jobs: uses: packetcoders/action-setup-cache-python-poetry@main with: python-version: 3.8 - poetry-version: 1.2.2 + poetry-version: 1.8.4 - name: bump pre-release version id: version @@ -70,7 +70,7 @@ jobs: uses: packetcoders/action-setup-cache-python-poetry@main with: python-version: 3.8 - poetry-version: 1.2.2 + poetry-version: 1.8.4 - name: Bump release version and build id: version diff --git a/.github/workflows/testing_coverage.yml b/.github/workflows/testing_coverage.yml index 90e0b77..871609e 100644 --- a/.github/workflows/testing_coverage.yml +++ b/.github/workflows/testing_coverage.yml @@ -32,7 +32,7 @@ jobs: uses: packetcoders/action-setup-cache-python-poetry@main with: python-version: 3.8 - poetry-version: 1.2.2 + poetry-version: 1.8.4 # Run pytest with coverage report, saving to xml - name: Run tests on python 3.8 diff --git a/.github/workflows/testing_multiversion.yml b/.github/workflows/testing_multiversion.yml index b4b4c16..db00f41 100644 --- a/.github/workflows/testing_multiversion.yml +++ b/.github/workflows/testing_multiversion.yml @@ -33,7 +33,7 @@ jobs: uses: packetcoders/action-setup-cache-python-poetry@main with: python-version: ${{matrix.python-version}} - poetry-version: 1.2.2 + poetry-version: 1.8.4 # Use cached python and dependencies, install poetry - name: Run tests on python ${{matrix.python-version}} diff --git a/.github/workflows/update_dependencies.yml b/.github/workflows/update_dependencies.yml index 468adcd..8b1d668 100644 --- a/.github/workflows/update_dependencies.yml +++ b/.github/workflows/update_dependencies.yml @@ -39,7 +39,7 @@ jobs: uses: packetcoders/action-setup-cache-python-poetry@main with: python-version: 3.8 - poetry-version: 1.8.2 + poetry-version: 1.8.4 # update poetry lockfile - name: "Update poetry lock file" diff --git a/poetry.lock b/poetry.lock index 355618f..9774b16 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. [[package]] name = "alabaster" @@ -13,13 +13,13 @@ files = [ [[package]] name = "anyio" -version = "4.5.0" +version = "4.5.2" description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = true python-versions = ">=3.8" files = [ - {file = "anyio-4.5.0-py3-none-any.whl", hash = "sha256:fdeb095b7cc5a5563175eedd926ec4ae55413bb4be5770c424af0ba46ccb4a78"}, - {file = "anyio-4.5.0.tar.gz", hash = "sha256:c5a275fe5ca0afd788001f58fca1e69e29ce706d746e317d660e21f70c530ef9"}, + {file = "anyio-4.5.2-py3-none-any.whl", hash = "sha256:c011ee36bc1e8ba40e5a81cb9df91925c218fe9b778554e0b56a21e1b5d4716f"}, + {file = "anyio-4.5.2.tar.gz", hash = "sha256:23009af4ed04ce05991845451e11ef02fc7c5ed29179ac9a420e5ad0ac7ddc5b"}, ] [package.dependencies] @@ -30,7 +30,7 @@ typing-extensions = {version = ">=4.1", markers = "python_version < \"3.11\""} [package.extras] doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] -test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.21.0b1)"] +test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21.0b1)"] trio = ["trio (>=0.26.1)"] [[package]] @@ -376,101 +376,116 @@ files = [ [[package]] name = "charset-normalizer" -version = "3.3.2" +version = "3.4.0" description = "The Real First Universal Charset Detector. 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a/.github/workflows/update_dependencies.yml +++ b/.github/workflows/update_dependencies.yml @@ -38,7 +38,7 @@ jobs: - name: "Setup Python, Poetry and Dependencies" uses: packetcoders/action-setup-cache-python-poetry@main with: - python-version: 3.8 + python-version: 3.9 poetry-version: 1.8.4 # update poetry lockfile From bfcdff8c9e04d4e3e2254b9a69591f365b0dd4ac Mon Sep 17 00:00:00 2001 From: rettigl Date: Fri, 13 Dec 2024 15:06:04 +0100 Subject: [PATCH 3/6] limit docutils --- .github/workflows/update_dependencies.yml | 2 +- poetry.lock | 17 ++++++++++------- pyproject.toml | 1 + 3 files changed, 12 insertions(+), 8 deletions(-) diff --git a/.github/workflows/update_dependencies.yml b/.github/workflows/update_dependencies.yml index 3727d60..9cf9990 100644 --- a/.github/workflows/update_dependencies.yml +++ b/.github/workflows/update_dependencies.yml @@ -39,7 +39,7 @@ jobs: uses: packetcoders/action-setup-cache-python-poetry@main with: python-version: 3.9 - poetry-version: 1.8.4 + poetry-version: 1.8.5 # update poetry lockfile - name: "Update poetry lock file" diff --git a/poetry.lock b/poetry.lock index 9774b16..0f0eda9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -793,8 +793,11 @@ name = "docutils" version = "0.20.1" description = "Docutils -- Python Documentation Utilities" optional = false -python-versions = "*" -files = [] +python-versions = ">=3.7" +files = [ + {file = "docutils-0.20.1-py3-none-any.whl", hash = "sha256:96f387a2c5562db4476f09f13bbab2192e764cac08ebbf3a34a95d9b1e4a59d6"}, + {file = "docutils-0.20.1.tar.gz", hash = "sha256:f08a4e276c3a1583a86dce3e34aba3fe04d02bba2dd51ed16106244e8a923e3b"}, +] [[package]] name = "exceptiongroup" @@ -2504,11 +2507,11 @@ files = [ [package.dependencies] numpy = [ {version = ">=1.21.0", markers = "python_version <= \"3.9\" and platform_system == \"Darwin\" and platform_machine == \"arm64\" and python_version >= \"3.8\""}, - {version = ">=1.19.3", markers = "platform_system == \"Linux\" and platform_machine == 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platform_system == \"Darwin\" and python_version < \"3.11\""}, {version = ">=1.21.2", markers = "platform_system != \"Darwin\" and python_version >= \"3.10\" and python_version < \"3.11\""}, - {version = ">=1.23.5", markers = "python_version >= \"3.11\""}, + {version = ">=1.19.3", markers = "platform_system == \"Linux\" and platform_machine == \"aarch64\" and python_version >= \"3.8\" and python_version < \"3.10\" or python_version > \"3.9\" and python_version < \"3.10\" or python_version >= \"3.9\" and platform_system != \"Darwin\" and python_version < \"3.10\" or python_version >= \"3.9\" and platform_machine != \"arm64\" and python_version < \"3.10\""}, + {version = ">=1.17.3", markers = "(platform_system != \"Darwin\" and platform_system != \"Linux\") and python_version >= \"3.8\" and python_version < \"3.9\" or platform_system != \"Darwin\" and python_version >= \"3.8\" and python_version < \"3.9\" and platform_machine != \"aarch64\" or platform_machine != \"arm64\" and python_version >= \"3.8\" and python_version < \"3.9\" and platform_system != \"Linux\" or (platform_machine != \"arm64\" and platform_machine != \"aarch64\") and python_version >= \"3.8\" and python_version < \"3.9\""}, ] [[package]] @@ -2637,8 +2640,8 @@ files = [ [package.dependencies] numpy = [ {version = ">=1.20.3", markers = "python_version < \"3.10\""}, - {version = ">=1.21.0", markers = "python_version >= \"3.10\" and python_version < \"3.11\""}, {version = ">=1.23.2", markers = "python_version >= \"3.11\""}, + {version = ">=1.21.0", markers = "python_version >= \"3.10\" and python_version < \"3.11\""}, ] python-dateutil = ">=2.8.2" pytz = ">=2020.1" @@ -4287,4 +4290,4 @@ notebook = ["ipykernel", "jupyter", "jupyterlab-h5web"] [metadata] lock-version = "2.0" python-versions = ">=3.8, <3.12" -content-hash = "2258b91410e9d7a2653defd46556a7d0695d8853bb41ac7110cb62a4a9c4a6fc" +content-hash = "fcb17564a04f17682a2d5a40ab5bdb5cc16984e612b6cd16e4415ddf1a24b946" diff --git a/pyproject.toml b/pyproject.toml index 2b8707d..5c7a619 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -19,6 +19,7 @@ license = "MIT" [tool.poetry.dependencies] python = ">=3.8, <3.12" +docutils = "<0.21" h5py = ">=3.6.0" imutils = ">=0.5.4" ipympl = ">=0.9.1" From 341b681c63e9c17f9b6bb14fbd69e01f544c0e12 Mon Sep 17 00:00:00 2001 From: rettigl Date: Fri, 13 Dec 2024 15:17:08 +0100 Subject: [PATCH 4/6] allow update of pynxtools --- pyproject.toml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 5c7a619..91a4376 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,8 +27,8 @@ ipywidgets = ">=7.7.1" matplotlib = ">=3.5.1" numpy = ">=1.21.6" opencv-python = ">=4.8.1.78" -pynxtools-mpes = "^0.2.0" -pynxtools = "^0.7.0" +pynxtools-mpes = ">=0.2.0" +pynxtools = ">=0.7.0" python-dateutil = ">=2.8.2" pyyaml = ">=6.0" xarray = ">=0.20.2" From f5f08bd005d7790bfa651be9c6d8b4462a8c40d5 Mon Sep 17 00:00:00 2001 From: rettigl Date: Fri, 13 Dec 2024 14:19:12 +0000 Subject: [PATCH 5/6] Update dependencies --- poetry.lock | 551 +++++++++++++++++++++++++++++----------------------- 1 file changed, 304 insertions(+), 247 deletions(-) diff --git a/poetry.lock b/poetry.lock index 0f0eda9..2c2aeb7 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. 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"virtualenv-20.27.1-py3-none-any.whl", hash = "sha256:f11f1b8a29525562925f745563bfd48b189450f61fb34c4f9cc79dd5aa32a1f4"}, - {file = "virtualenv-20.27.1.tar.gz", hash = "sha256:142c6be10212543b32c6c45d3d3893dff89112cc588b7d0879ae5a1ec03a47ba"}, + {file = "virtualenv-20.28.0-py3-none-any.whl", hash = "sha256:23eae1b4516ecd610481eda647f3a7c09aea295055337331bb4e6892ecce47b0"}, + {file = "virtualenv-20.28.0.tar.gz", hash = "sha256:2c9c3262bb8e7b87ea801d715fae4495e6032450c71d2309be9550e7364049aa"}, ] [package.dependencies] @@ -4290,4 +4347,4 @@ notebook = ["ipykernel", "jupyter", "jupyterlab-h5web"] [metadata] lock-version = "2.0" python-versions = ">=3.8, <3.12" -content-hash = "fcb17564a04f17682a2d5a40ab5bdb5cc16984e612b6cd16e4415ddf1a24b946" +content-hash = "96450acafb9e18ebceb3cf9a2721e43f8d08d5faa47dc92cf91bc07c0290f1ae" From d42707c9712d7c9e1789a41f79f78acf9d7dfdc1 Mon Sep 17 00:00:00 2001 From: rettigl Date: Sat, 14 Dec 2024 00:31:55 +0100 Subject: [PATCH 6/6] update poetry --- .github/workflows/documentation.yml | 2 +- .github/workflows/linting.yml | 2 +- .github/workflows/release.yml | 4 ++-- .github/workflows/testing_coverage.yml | 2 +- .github/workflows/testing_multiversion.yml | 2 +- .github/workflows/update_dependencies.yml | 2 +- 6 files changed, 7 insertions(+), 7 deletions(-) diff --git a/.github/workflows/documentation.yml b/.github/workflows/documentation.yml index 9d54000..2516397 100644 --- a/.github/workflows/documentation.yml +++ b/.github/workflows/documentation.yml @@ -47,7 +47,7 @@ jobs: uses: packetcoders/action-setup-cache-python-poetry@main with: python-version: 3.8 - poetry-version: 1.8.4 + poetry-version: 1.8.5 - name: Install notebook dependencies run: poetry install -E notebook --with docs diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml index 98b3757..bcd4693 100644 --- a/.github/workflows/linting.yml +++ b/.github/workflows/linting.yml @@ -28,7 +28,7 @@ jobs: uses: packetcoders/action-setup-cache-python-poetry@main with: python-version: 3.8 - poetry-version: 1.8.4 + poetry-version: 1.8.5 # Linting steps, execute all linters even if one fails - name: ruff diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index e8ecf23..99cdb37 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -34,7 +34,7 @@ jobs: uses: packetcoders/action-setup-cache-python-poetry@main with: python-version: 3.8 - poetry-version: 1.8.4 + poetry-version: 1.8.5 - name: bump pre-release version id: version @@ -70,7 +70,7 @@ jobs: uses: packetcoders/action-setup-cache-python-poetry@main with: python-version: 3.8 - poetry-version: 1.8.4 + poetry-version: 1.8.5 - name: Bump release version and build id: version diff --git a/.github/workflows/testing_coverage.yml b/.github/workflows/testing_coverage.yml index 871609e..1a2baf9 100644 --- a/.github/workflows/testing_coverage.yml +++ b/.github/workflows/testing_coverage.yml @@ -32,7 +32,7 @@ jobs: uses: packetcoders/action-setup-cache-python-poetry@main with: python-version: 3.8 - poetry-version: 1.8.4 + poetry-version: 1.8.5 # Run pytest with coverage report, saving to xml - name: Run tests on python 3.8 diff --git a/.github/workflows/testing_multiversion.yml b/.github/workflows/testing_multiversion.yml index db00f41..e45d009 100644 --- a/.github/workflows/testing_multiversion.yml +++ b/.github/workflows/testing_multiversion.yml @@ -33,7 +33,7 @@ jobs: uses: packetcoders/action-setup-cache-python-poetry@main with: python-version: ${{matrix.python-version}} - poetry-version: 1.8.4 + poetry-version: 1.8.5 # Use cached python and dependencies, install poetry - name: Run tests on python ${{matrix.python-version}} diff --git a/.github/workflows/update_dependencies.yml b/.github/workflows/update_dependencies.yml index 9cf9990..eeb8e8a 100644 --- a/.github/workflows/update_dependencies.yml +++ b/.github/workflows/update_dependencies.yml @@ -38,7 +38,7 @@ jobs: - name: "Setup Python, Poetry and Dependencies" uses: packetcoders/action-setup-cache-python-poetry@main with: - python-version: 3.9 + python-version: 3.8 poetry-version: 1.8.5 # update poetry lockfile