diff --git a/workflow/scripts/seuratSampleQC.R b/workflow/scripts/seuratSampleQC.R index 5414a52..9e2b64d 100644 --- a/workflow/scripts/seuratSampleQC.R +++ b/workflow/scripts/seuratSampleQC.R @@ -201,7 +201,7 @@ seur <- RunUMAP(seur, reduction = 'pca', dims = 1:30, assay = 'RNA') coord <- Embeddings(seur, reduction='pca')[,1:30] d <- dist(coord, method="euclidean") -for(resolution in c(seq(0.2,1.0,0.2), 1.5, 2.0)){ +for(resolution in c(0.1, seq(0.2,1.0,0.2), 1.5, 2.0)){ seur <- FindClusters(seur, resolution = resolution) #Calculate silhouette scores and generate plots