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Benchmark somatic pipeline with SEQC2 T-only sample #24

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skchronicles opened this issue Dec 20, 2024 · 0 comments
Open

Benchmark somatic pipeline with SEQC2 T-only sample #24

skchronicles opened this issue Dec 20, 2024 · 0 comments
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@skchronicles
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Benchmark somatic pipeline with SEQC2 Tumor-only sample

  1. Benchmark our current tumor-only variant callers
  • Octopus
  • mutect2
  1. Benchmark the following new somatic variant callers:
  • ClairS-TO
  • SAGE
@skchronicles skchronicles self-assigned this Dec 20, 2024
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