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Handling Mondo's disease_responds_to edges #403

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ecwood opened this issue Jul 30, 2024 · 0 comments
Open

Handling Mondo's disease_responds_to edges #403

ecwood opened this issue Jul 30, 2024 · 0 comments

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@ecwood
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ecwood commented Jul 30, 2024

After the biolink:treats refactor, these edges are still getting mapped to biolink:treats. We need to think about the optimal way to handle these going forward. Here are the edges (note the source predicate is inverted to become biolink:treats, so these appear backwards):

n.id n.name e.primary_knowledge_source e.source_predicate m.id m.name
"CHEBI:18405" "pyridoxal 5'-phosphate" "infores:mondo" "MONDO:disease_responds_to" "MONDO:0012407" "pyridoxal phosphate-responsive seizures"
"CHEBI:27690" "acetazolamide" "infores:mondo" "MONDO:disease_responds_to" "MONDO:0100052" "acetazolamide-responsive hereditary episodic ataxia"
"CHEBI:15765" "L-dopa" "infores:mondo" "MONDO:disease_responds_to" "MONDO:0007495" "dystonia 5"
"CHEBI:30411" "cobalamin" "infores:mondo" "MONDO:disease_responds_to" "MONDO:0017214" "vitamin B12-responsive methylmalonic acidemia"
"CHEBI:26948" "vitamin B1" "infores:mondo" "MONDO:disease_responds_to" "MONDO:0017054" "thiamine-responsive maple syrup urine disease"
"CHEBI:26948" "vitamin B1" "infores:mondo" "MONDO:disease_responds_to" "MONDO:0000152" "thiamine-responsive dysfunction syndrome"
"CHEBI:17015" "riboflavin" "infores:mondo" "MONDO:disease_responds_to" "MONDO:0014795" "exercise intolerance, riboflavin-responsive"
"CHEBI:59560" "sapropterin" "infores:mondo" "MONDO:disease_responds_to" "MONDO:0017389" "tetrahydrobiopterin-responsive hyperphenylalaninemia/phenylketonuria"
"CHEBI:15956" "biotin" "infores:mondo" "MONDO:disease_responds_to" "MONDO:0011841" "biotin-responsive basal ganglia disease"
"CHEBI:27690" "acetazolamide" "infores:mondo" "MONDO:disease_responds_to" "MONDO:0020483" "acetazolamide-responsive myotonia"
"CHEBI:16709" "pyridoxine" "infores:mondo" "MONDO:disease_responds_to" "MONDO:0008786" "pyridoxine-responsive sideroblastic anemia"
"CHEBI:27363" "zinc atom" "infores:mondo" "MONDO:disease_responds_to" "MONDO:0018586" "zinc-responsive necrolytic acral erythema"
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