NAMESPACE

# Generated by roxygen2: do not edit by hand

export(K)
export(PICS)
export(bam2gr)
export(candidate.region)
export(chromosome)
export(code)
export(delta)
export(makeGRangesOutput)
export(maxRange)
export(minRange)
export(mu)
export(picsFDR)
export(score)
export(scoreForward)
export(scoreReverse)
export(se)
export(seF)
export(seR)
export(segChrRead)
export(segReads)
export(segReadsGeneric)
export(segReadsList)
export(segReadsListPE)
export(segReadsPE)
export(segmentPICS)
export(setParaEM)
export(setParaPrior)
export(sigmaSqF)
export(sigmaSqR)
export(summarySeg)
export(w)
exportClasses(pics)
exportClasses(picsError)
exportClasses(picsList)
exportClasses(segReads)
exportClasses(segReadsList)
exportClasses(segReadsListPE)
exportClasses(segReadsPE)
exportMethods("[")
exportMethods("[[")
exportMethods(map)
exportMethods(plot)
exportMethods(show)
exportMethods(summary)
import(methods)
importClassesFrom(GenomicRanges,GRanges)
importClassesFrom(IRanges,IRanges)
importFrom(GenomicAlignments,readGAlignments)
importFrom(GenomicRanges,"elementMetadata<-")
importFrom(GenomicRanges,"end<-")
importFrom(GenomicRanges,"start<-")
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,elementMetadata)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,strand)
importFrom(IRanges,IRanges)
importFrom(IRanges,coverage)
importFrom(IRanges,disjoin)
importFrom(IRanges,end)
importFrom(IRanges,slice)
importFrom(IRanges,start)
importFrom(IRanges,viewMaxs)
importFrom(IRanges,viewMins)
importFrom(IRanges,width)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,scanBamFlag)
importFrom(grDevices,grey)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,grid)
importFrom(graphics,layout)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,segments)
importFrom(graphics,stripchart)
importFrom(graphics,symbols)
importFrom(graphics,title)
importFrom(stats,density)
importFrom(stats,dt)
importFrom(stats,reshape)
importFrom(utils,tail)
useDynLib(PICS, .registration = TRUE)