From 2a74ee3d2fd1fabf82411ca650b3b979490b086a Mon Sep 17 00:00:00 2001 From: siddharth0248 Date: Fri, 26 Jan 2024 17:29:09 -0600 Subject: [PATCH 1/3] Update data paths --- .gitattributes | 2 ++ ...-ch4emission-grid-v2express_User_Notebook.ipynb | 2 +- .../lpjwsl-wetlandch4-grid-v1_User_Notebook.ipynb | 14 +++++++------- .../emit-ch4plume-v1_User_Notebook.ipynb | 8 ++++---- 4 files changed, 14 insertions(+), 12 deletions(-) create mode 100644 .gitattributes diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 0000000..fc6219c --- /dev/null +++ b/.gitattributes @@ -0,0 +1,2 @@ +*.nc4 filter=lfs diff=lfs merge=lfs -text +*.json filter=lfs diff=lfs merge=lfs -text diff --git a/sections/use-case-1/epa-ch4emission-grid-v2express_User_Notebook.ipynb b/sections/use-case-1/epa-ch4emission-grid-v2express_User_Notebook.ipynb index 6c333a7..159c2c4 100644 --- a/sections/use-case-1/epa-ch4emission-grid-v2express_User_Notebook.ipynb +++ b/sections/use-case-1/epa-ch4emission-grid-v2express_User_Notebook.ipynb @@ -111,7 +111,7 @@ "# User can pass any json or shape file here\n", "# The \"geopandas\" library makes working with geospatial data easier by facilitating spatial operations on geometric types \n", "\n", - "permian_basin = geopandas.read_file('../data/use-case-3/permian.zip')" + "permian_basin = geopandas.read_file('../use-case-3/data/permian.zip')" ] }, { diff --git a/sections/use-case-2/lpjwsl-wetlandch4-grid-v1_User_Notebook.ipynb b/sections/use-case-2/lpjwsl-wetlandch4-grid-v1_User_Notebook.ipynb index ad8417b..0baafbc 100644 --- a/sections/use-case-2/lpjwsl-wetlandch4-grid-v1_User_Notebook.ipynb +++ b/sections/use-case-2/lpjwsl-wetlandch4-grid-v1_User_Notebook.ipynb @@ -317,11 +317,11 @@ "metadata": {}, "outputs": [], "source": [ - "merra_t2m_dir='../data/use-case-2/merra_t2m_dir/'\n", - "merra_soil_moisture_dir = '../data/use-case-2/merra_soil_moisture_dir/'\n", - "merra_precip_rate_dir = '../data/use-case-2/merra_precip_rate_dir/'\n", - "merra_t2m_clim_dir = '../data/use-case-2/merra_t2m_clim_dir/'\n", - "savedir = '../data/use-case-2/saved_files'\n", + "merra_t2m_dir='data/merra_t2m_dir/'\n", + "merra_soil_moisture_dir = 'data/merra_soil_moisture_dir/'\n", + "merra_precip_rate_dir = 'data/merra_precip_rate_dir/'\n", + "merra_t2m_clim_dir = 'data/merra_t2m_clim_dir/'\n", + "savedir = 'data/saved_files'\n", "\n", "merra_precip_rate_clim_dir = merra_t2m_clim_dir \n", "merra_soil_moisture_clim_dir = merra_t2m_clim_dir" @@ -616,7 +616,7 @@ "\n", "\n", "# Insert the path to the NetCDF file\n", - "file_path = '../data/use-case-2/merra_t2m_dir/1991/MERRA2_100.instM_2d_asm_Nx.199101.nc4' # Replace with the path to your NetCDF file\n", + "file_path = 'data/merra_t2m_dir/1991/MERRA2_100.instM_2d_asm_Nx.199101.nc4' # Replace with the path to your NetCDF file\n", "dataset = nc.Dataset(file_path)\n", "\n", "\n", @@ -960,7 +960,7 @@ " ax.set_xlim(-1,12)\n", " ax.set_ylim(min(ts['box_totals']),max(ts['box_totals'])) # manual per parameter\n", " plt.show()\n", - " plt.savefig('../data/use-case-2/saved_files/'+savename.split('/')[-1],dpi=300,bbox_inches='tight')" + " plt.savefig('data/saved_files/'+savename.split('/')[-1],dpi=300,bbox_inches='tight')" ] } ], diff --git a/sections/use-case-3/emit-ch4plume-v1_User_Notebook.ipynb b/sections/use-case-3/emit-ch4plume-v1_User_Notebook.ipynb index 456cc02..0c2c50f 100644 --- a/sections/use-case-3/emit-ch4plume-v1_User_Notebook.ipynb +++ b/sections/use-case-3/emit-ch4plume-v1_User_Notebook.ipynb @@ -118,7 +118,7 @@ "# Loading Permian Basin shape file as a region of interest\n", "# User can pass any json or shape file here\n", "# The \"geopandas\" library makes working with geospatial data easier by facilitating spatial operations on geometric types \n", - "permian_basin = geopandas.read_file('../data/use-case-3/permian.zip')\n", + "permian_basin = geopandas.read_file('data/permian.zip')\n", "permian_basin = permian_basin.set_crs(4326,allow_override=True)" ] }, @@ -129,18 +129,18 @@ "outputs": [], "source": [ "# The ISS spatial coverage data is called on here\n", - "coverage = geopandas.read_file('../data/use-case-3/coverage.json')\n", + "coverage = geopandas.read_file('data/coverage.json')\n", "coverage = coverage.set_crs(4326,allow_override=True)\n", "\n", "# The ISS Date Time is converted to strings\n", "coverage['new_start_time'] = coverage.start_time.astype('str')\n", "\n", "# locations of where plumes are detected for the August 1, 2022 - present time period\n", - "metadata_json = geopandas.read_file('../data/use-case-3/methane_metadata.json')\n", + "metadata_json = geopandas.read_file('data/methane_metadata.json')\n", "metadata_json = metadata_json.set_crs(4326,allow_override=True)\n", "metadata_json['new_start_time'] = metadata_json['UTC Time Observed'].astype('str')\n", "metadata_json['Scene FIDs'] = list(map(lambda x : x[0] ,metadata_json['Scene FIDs']))\n", - "target_mask = geopandas.read_file('../data/use-case-3/target_mask.json')\n", + "target_mask = geopandas.read_file('data/target_mask.json')\n", "target_mask = target_mask.set_crs(4326,allow_override=True)\n", "\n", "\n", From 2d29bbf073a4e7f758b8cba0862dc34e273aee0d Mon Sep 17 00:00:00 2001 From: siddharth0248 Date: Fri, 26 Jan 2024 17:33:04 -0600 Subject: [PATCH 2/3] Add use case 2 data --- .gitignore | 3 --- .../1991/MERRA2_100.tavgM_2d_flx_Nx.199101.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_flx_Nx.199102.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_flx_Nx.199103.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_flx_Nx.199104.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_flx_Nx.199105.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_flx_Nx.199106.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_flx_Nx.199107.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_flx_Nx.199108.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_flx_Nx.199109.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_flx_Nx.199110.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_flx_Nx.199111.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_flx_Nx.199112.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_lnd_Nx.199101.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_lnd_Nx.199102.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_lnd_Nx.199103.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_lnd_Nx.199104.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_lnd_Nx.199105.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_lnd_Nx.199106.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_lnd_Nx.199107.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_lnd_Nx.199108.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_lnd_Nx.199109.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_lnd_Nx.199110.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_lnd_Nx.199111.nc4 | 3 +++ .../1991/MERRA2_100.tavgM_2d_lnd_Nx.199112.nc4 | 3 +++ ...ERRA2.tavgC_2d_ltm_Nx.v2_0.199101_202001.nc4 | 3 +++ ...ERRA2.tavgC_2d_ltm_Nx.v2_0.199102_202002.nc4 | 3 +++ ...ERRA2.tavgC_2d_ltm_Nx.v2_0.199103_202003.nc4 | 3 +++ ...ERRA2.tavgC_2d_ltm_Nx.v2_0.199104_202004.nc4 | 3 +++ ...ERRA2.tavgC_2d_ltm_Nx.v2_0.199105_202005.nc4 | 3 +++ ...ERRA2.tavgC_2d_ltm_Nx.v2_0.199106_202006.nc4 | 3 +++ ...ERRA2.tavgC_2d_ltm_Nx.v2_0.199107_202007.nc4 | 3 +++ ...ERRA2.tavgC_2d_ltm_Nx.v2_0.199108_202008.nc4 | 3 +++ ...ERRA2.tavgC_2d_ltm_Nx.v2_0.199109_202009.nc4 | 3 +++ ...ERRA2.tavgC_2d_ltm_Nx.v2_0.199110_202010.nc4 | 3 +++ ...ERRA2.tavgC_2d_ltm_Nx.v2_0.199111_202011.nc4 | 3 +++ ...ERRA2.tavgC_2d_ltm_Nx.v2_0.199112_202012.nc4 | 3 +++ .../1991/MERRA2_100.instM_2d_asm_Nx.199101.nc4 | 3 +++ .../1991/MERRA2_100.instM_2d_asm_Nx.199102.nc4 | 3 +++ .../1991/MERRA2_100.instM_2d_asm_Nx.199103.nc4 | 3 +++ .../1991/MERRA2_100.instM_2d_asm_Nx.199104.nc4 | 3 +++ .../1991/MERRA2_100.instM_2d_asm_Nx.199105.nc4 | 3 +++ .../1991/MERRA2_100.instM_2d_asm_Nx.199106.nc4 | 3 +++ .../1991/MERRA2_100.instM_2d_asm_Nx.199107.nc4 | 3 +++ .../1991/MERRA2_100.instM_2d_asm_Nx.199108.nc4 | 3 +++ .../1991/MERRA2_100.instM_2d_asm_Nx.199109.nc4 | 3 +++ .../1991/MERRA2_100.instM_2d_asm_Nx.199110.nc4 | 3 +++ .../1991/MERRA2_100.instM_2d_asm_Nx.199111.nc4 | 3 +++ .../1991/MERRA2_100.instM_2d_asm_Nx.199112.nc4 | 3 +++ sections/use-case-3/data/Permian.zip | Bin 0 -> 10243 bytes sections/use-case-3/data/coverage.json | 3 +++ sections/use-case-3/data/methane_metadata.json | 3 +++ sections/use-case-3/data/target_mask.json | 3 +++ 53 files changed, 153 insertions(+), 3 deletions(-) create mode 100644 sections/use-case-2/data/merra_precip_rate_dir/1991/MERRA2_100.tavgM_2d_flx_Nx.199101.nc4 create mode 100644 sections/use-case-2/data/merra_precip_rate_dir/1991/MERRA2_100.tavgM_2d_flx_Nx.199102.nc4 create mode 100644 sections/use-case-2/data/merra_precip_rate_dir/1991/MERRA2_100.tavgM_2d_flx_Nx.199103.nc4 create mode 100644 sections/use-case-2/data/merra_precip_rate_dir/1991/MERRA2_100.tavgM_2d_flx_Nx.199104.nc4 create mode 100644 sections/use-case-2/data/merra_precip_rate_dir/1991/MERRA2_100.tavgM_2d_flx_Nx.199105.nc4 create mode 100644 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sections/use-case-3/data/target_mask.json diff --git a/.gitignore b/.gitignore index 9ef175a..ed84981 100644 --- a/.gitignore +++ b/.gitignore @@ -1,6 +1,3 @@ /.quarto/ _site/ -*.json -*.zip -*.nc4 *.DS_STORE diff --git a/sections/use-case-2/data/merra_precip_rate_dir/1991/MERRA2_100.tavgM_2d_flx_Nx.199101.nc4 b/sections/use-case-2/data/merra_precip_rate_dir/1991/MERRA2_100.tavgM_2d_flx_Nx.199101.nc4 new file mode 100644 index 0000000..befc217 --- /dev/null +++ b/sections/use-case-2/data/merra_precip_rate_dir/1991/MERRA2_100.tavgM_2d_flx_Nx.199101.nc4 @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:50865d66c4b69b871e3c045beb002327217f9ed7fe446ae7ca4def47969833cd +size 54678854 diff --git a/sections/use-case-2/data/merra_precip_rate_dir/1991/MERRA2_100.tavgM_2d_flx_Nx.199102.nc4 b/sections/use-case-2/data/merra_precip_rate_dir/1991/MERRA2_100.tavgM_2d_flx_Nx.199102.nc4 new file mode 100644 index 0000000..e22b459 --- /dev/null +++ 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b/sections/use-case-3/data/methane_metadata.json new file mode 100644 index 0000000..da6dfbd --- /dev/null +++ b/sections/use-case-3/data/methane_metadata.json @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ff3d020ee49380d1d895459aa0264d59fbd9d5b6da396db27c92fe2281e0ccc1 +size 2079889 diff --git a/sections/use-case-3/data/target_mask.json b/sections/use-case-3/data/target_mask.json new file mode 100644 index 0000000..865c82c --- /dev/null +++ b/sections/use-case-3/data/target_mask.json @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0bbf634c25f437a16a5a719f6f876a6f7639225c76907b4211d942895504c743 +size 553568 From 90985d087125402961e6adaf921f9704774837d9 Mon Sep 17 00:00:00 2001 From: siddharth0248 Date: Fri, 26 Jan 2024 17:41:02 -0600 Subject: [PATCH 3/3] Use LFS