diff --git a/R/epa_markup.R b/R/epa_markup.R index 2a9ba7c86..4b8fd810b 100644 --- a/R/epa_markup.R +++ b/R/epa_markup.R @@ -24,11 +24,17 @@ crossorigin = "anonymous", referrerpolicy = "no-referrer" ), + # use updated EPA template (https://www.epa.gov/themes/epa_theme/pattern-lab/?p=pages-standalone-template) provided by Brad instead? tags$meta(property = "og:url", content = "https://www.epa.gov/themes/epa_theme/pattern-lab/.markup-only.html"), tags$link(rel = "canonical", href = "https://www.epa.gov/themes/epa_theme/pattern-lab/.markup-only.html"), tags$link(rel = "shortlink", href = "https://www.epa.gov/themes/epa_theme/pattern-lab/.markup-only.html"), tags$meta(property = "og:url", content = "https://www.epa.gov/themes/epa_theme/pattern-lab/.markup-only.html"), - tags$meta(property = "og:image", content = "https://www.epa.gov/sites/all/themes/epa/img/epa-standard-og.jpg"), + #tags$meta(property = "og:url", content = "https://www.epa.gov/themes/epa_theme/pattern-lab/?p=pages-standalone-template"), + #tags$link(rel = "canonical", href = "https://www.epa.gov/themes/epa_theme/pattern-lab/?p=pages-standalone-template"), + #tags$link(rel = "shortlink", href = "https://www.epa.gov/themes/epa_theme/pattern-lab/?p=pages-standalone-template"), + #tags$meta(property = "og:url", content = "https://www.epa.gov/themes/epa_theme/pattern-lab/?p=pages-standalone-template"), + # jpg below + tags$meta(property = "og:image", content = "https://www.epa.gov/sites/all/themes/epa/img/epa-standard-og.jpg"), tags$meta(property = "og:image:width", content = "1200"), tags$meta(property = "og:image:height", content = "630"), tags$meta(property = "og:image:alt", content = "U.S. Environmental Protection Agency"), @@ -91,11 +97,22 @@ tags$link(rel = "stylesheet", media = "all", href = "https://www.epa.gov/core/themes/stable/css/system/components/tabledrag.module.css?r6lsex"), tags$link(rel = "stylesheet", media = "all", href = "https://www.epa.gov/core/themes/stable/css/system/components/tablesort.module.css?r6lsex"), tags$link(rel = "stylesheet", media = "all", href = "https://www.epa.gov/core/themes/stable/css/system/components/tree-child.module.css?r6lsex"), - tags$link(rel = "stylesheet", media = "all", href = "https://www.epa.gov/themes/epa_theme/css/styles.css?r6lsex"), - tags$link(rel = "stylesheet", media = "all", href = "https://www.epa.gov/themes/epa_theme/css-lib/colorbox.min.css?r6lsex"), - - tags$script(src = 'https://cdnjs.cloudflare.com/ajax/libs/uswds/3.0.0-beta.3/js/uswds-init.min.js'), - #fix container-fluid that boostrap RShiny uses + + ################# + # BELOW (https://www.epa.gov/themes/epa_theme/css/styles.css?r6lsex) CAUSES ISSUES WITH PLOTLY AND LEAFLET + # tags$link(rel = "stylesheet", media = "all", href = "https://www.epa.gov/themes/epa_theme/css/styles.css?r6lsex"), + # try referencing locally using file shared by Garrett (styles.css in www folder), not sure if this is the same + # this file doesnt look right but doesnt cause the PLOTLY or LEAFLET issues + # tags$link(rel = "stylesheet", type = "text/css", href = "styles.css"), + # try copying https://www.epa.gov/themes/epa_theme/css/styles.css?r6lsex into css file and reference that locally (see styles2.css in www folder) + # doing this doesnt look right AND still causes the PLOTLY and LEAFLET issues + # tags$link(rel = "stylesheet", type = "text/css", href = "styles2.css"), + ################# + + tags$link(rel = "stylesheet", media = "all", href = "https://www.epa.gov/themes/epa_theme/css-lib/colorbox.min.css?r6lsex"), + # this is a beta file, may have issues, js files tend to have issues + tags$script(src = 'https://cdnjs.cloudflare.com/ajax/libs/uswds/3.0.0-beta.3/js/uswds-init.min.js'), + # fix container-fluid that boostrap RShiny uses tags$style( HTML( '.container-fluid { diff --git a/inst/app/www/index-showhide-archive.html b/inst/app/www/index-showhide-archive.html deleted file mode 100644 index e13e00a5d..000000000 --- a/inst/app/www/index-showhide-archive.html +++ /dev/null @@ -1,965 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Tools for Automated Data Assessment | US EPA - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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A lock () or https:// means you’ve safely connected to the .gov website. Share sensitive information only on official, secure websites. -

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Data Import

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TADA accepts spreadsheets in the .csv format from the Water Quality Portal or any .csv formatted in the Water Quality eXchange (WQX) format (i.e., WQX required column headers). Use the features on this screen to upload your data. For questions or assistance using TADA, please contact the TADA team at mullin.cristina@epa.gov and include the phrase "TADA Data Discovery and Cleaning" in the subject line.

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Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.

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  • - Total Records in Raw File: 544 -
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Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.

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Flagged Results Data

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Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.

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Total Flagged Results Data: 120

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R FunctionSummary of flagged resultsExplanationRemove?
Invalid_Speciation4 (list parameters)The speciation provided for a given characteristic is not valid. Would you like to remove invalid speciation data? -
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Invalid_Fraction3 (list parameters)Remote invalid fraction data? -
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Invalid_ResultValue_Special_Characters7 (list parameters)Result values include special characteristics. Remove? -
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Uncommon_Analytical_Method5 (list parameters)Analytical method is uncommon. Remove records with uncommon methods? -
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DatasetIncludes_AggregatedContinuousDataTrue, 30 records across 2 stations (list site names and parameters)Would you like to remove aggregate, high frequency, continuous, sensor data? -
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TrueDuplicates_UniqueRowIdentifier20 (list parameters)Would you like to remove true duplicates? -
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PotentialDuplicates_UniqueRowIdentifier6 (list parameters)Data are potential duplicates, but our confidence is not 100%. Would you like to remove potential duplicates? (maybe include link to read more?) -
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ActivityMediaName_NOTWATER67 (list parameters)Remove all sample data that is not for the media "water" -
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Results_Value_Below_WQXLowerThreshold24 for x parameters (list parameters)Result value is outside of the national lower range for a given parameter. Remove? -
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Result_Value_Exceeds_WQXUpperThreshold7 for x parameters (list parameters)Result value is outside of the national upper range for a given parameter. Remove? -
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ConvertDepthHeightUnitsMultiple units found (list parameters)Would you like to convert to ft or m? - - -
Convert_MultipleTimeZonesMultiple end time zones were found. (list site name)Would you like to convert to a standard time zone? -
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- Summary -

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  • - Total Records in Raw File: 544 -
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An official website of the United States government

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- Dot gov -
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- Official websites use .gov -
A .gov website belongs to an official government organization in the United States. -

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-
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- HTTPS -
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- Secure .gov websites use HTTPS -
A lock ( - - - - - - - - ) or https:// means you’ve safely connected to the .gov website. Share sensitive information only on official, secure websites. -

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Data Import

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Import your data!

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- TADA accepts spreadsheets in the .csv format from the Water Quality Portal or any .csv formatted in the Water Quality eXchange (WQX) format (i.e., WQX required column headers). Use the features on this screen to upload your data. For questions or assistance using TADA, please contact the TADA team at mullin.cristina@epa.gov and include the phrase "TADA Data Discovery and Cleaning" in the subject line. -

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Review WQX 3.0 Physical/Chemical Data Import Template

- Download WQX 3.0 Data Import Template -

Data Import

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Data Import Summary

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Overview

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Flagged Sites and Results

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We reviewed and appended columns to your dataset to flag results that may be inacurate, uncommon, or not relevant. You can remove data from your dataset that you do not need using the toggles below. If you decide not to remove flagged data, the flag columns we added to perform this check will still be available in the spreadsheet that you can download.

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Total Flagged Results Data: 120

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R FunctionSummary of flagged resultsExplanationRemove?
Invalid_Speciation4 (list parameters)The speciation provided for a given characteristic is not valid. Would you like to remove invalid speciation data? -
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Invalid_Fraction3 (list parameters)Remote invalid fraction data? -
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Invalid_Unit5 (list parameters)Remove data width invalid units for a given characteristic and media combination? -
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Invalid_ResultValue_Special_Characters7 (list parameters)Result values include special characteristics. Remove? -
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Uncommon_Analytical_Method5 (list parameters)Analytical method is uncommon. Remove records with uncommon methods? -
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QAPP_NOTApproved5 were not approved by X organizations (list organizations that did not approve here?)Remove data if QAPP was not approved -
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QAPP_Doc_Missing7 (list parameters)Remove data if QAPP doc is missing -
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DatasetIncludes_AggregatedContinuousDataTrue, 30 records across 2 stations (list site names and parameters)Would you like to remove aggregate, high frequency, continuous, sensor data? -
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TrueDuplicates_UniqueRowIdentifier20 (list parameters)Would you like to remove true duplicates? -
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PotentialDuplicates_UniqueRowIdentifier6 (list parameters)Data are potential duplicates, but our confidence is not 100%. Would you like to remove potential duplicates? (maybe include link to read more?) -
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ActivityMediaName_NOTWATER67 (list parameters)Remove all sample data that is not for the media "water" -
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Results_Value_Below_WQXLowerThreshold24 for x parameters (list parameters)Result value is outside of the national lower range for a given parameter. Remove? -
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Result_Value_Exceeds_WQXUpperThreshold7 for x parameters (list parameters)Result value is outside of the national upper range for a given parameter. Remove? -
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ConvertDepthHeightUnitsMultiple units found (list parameters)Would you like to convert to ft or m? - - -
Convert_MultipleTimeZonesMultiple end time zones were found. (list site name)Would you like to convert to a standard time zone? -
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Total N and P Summations

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