Some errors when trying to batch download with 12S and 16S markers

[ucbtmae]

Hello,

I am finding two errors when batch downloading using PrimerMiner...

I have set the marker in the config file to: Marker = c("16s", "16S", "16S ribosomal RNA", "16s Ribosomal RNA") # specify target gene and I have turned off the downloads from BOLD as specified in the Wiki
But then, when running the batch download script I find this problem (For Coleoptera families there is no problem at all, only when going to other orders and families of insects):

Error in download.file(paste("https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=", :
'curl' call had nonzero exit status
curl: (16) Error in the HTTP2 framing layer

Also, I am noticing that even when I check the Coleoptera file, there is no Groups_mito.fasta file to work within the Alignment process in Geneious

[carlottap]

I have the same issue.

curl: (16) Error in the HTTP2 framing layer
Error in download.file(paste("https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=", : 'curl' call had nonzero exit status

Could you find a solution? Thanks in advance.

[biodray]

I've got a similar error.

sh: 1: curl: not found
Error in download.file(paste("https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=", :
'curl' call had nonzero exit status
In addition: Warning message:
In system(paste("curl", paste(extra, collapse = " "), shQuote(url), :
error in running command

The function break when trying to download mitochondrial data...