plot_alignment step restrictions

[ucbtmae]

Hi @VascoElbrecht

I hope everything's going well!

I have been using PrimerMiner to develop some specific and metabarcoding primers, so I've been using some Geneious fasta files that I already have (but complying with your recommendations in the YT tutorial) instead of following the batch download steps.

The problem arises when I try to plot more than 4 individual fasta files with plot_alignment. Using 5 or more files results in an incomplete plot (without the consensus and nucleotide letter part) with the console returning this mistake:

> plot_alignments(alignments, Order_names=gsub(".*./._(.*)_.*", "\\1", alignments)) Error in list[[k]][start:end, 2:5] : subscript out of bounds

I have been trying to see if changing the height and width could solve it without any improvements. Any recommendations?

[VascoElbrecht]

hey Alejandro = ) Can you send me a link to the files causing issues per dropbox or google drive, i can have a look