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You could simply run AMIRA once in a "manual" mode, i.e. just execute the command with the proper configuration that already contains newly created S3 bucket and SQS queue. After this initial run presumably fails, because the test notification cannot be parsed, all subsequent runs should work alright.
Alternatively you could purge the SQS queue so that the test message is removed before running AMIRA.
When configuring new s3 notifications ensure that the initial test notification is ignored.
Below is an example of a test notification body:
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