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utrlm_requirements.txt
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absl-py==1.3.0
aiohttp==3.8.4
aiosignal==1.3.1
alabaster==0.7.13
aniso8601==9.0.1
anndata==0.8.0
ansi2html==1.8.0
antlr4-python3-runtime==4.9.3
anyio @ file:///home/conda/feedstock_root/build_artifacts/anyio_1652463862396/work/dist
argon2-cffi @ file:///home/conda/feedstock_root/build_artifacts/argon2-cffi_1640817743617/work
argon2-cffi-bindings @ file:///home/conda/feedstock_root/build_artifacts/argon2-cffi-bindings_1649500321618/work
arrow==1.2.2
ase==3.22.1
asttokens==2.2.1
astunparse==1.6.3
async-timeout==4.0.2
attrs==22.2.0
autopep8==2.0.2
awscli @ file:///home/conda/feedstock_root/build_artifacts/awscli_1650699637327/work
Babel @ file:///home/conda/feedstock_root/build_artifacts/babel_1655419414885/work
backcall==0.2.0
backports.functools-lru-cache @ file:///home/conda/feedstock_root/build_artifacts/backports.functools_lru_cache_1618230623929/work
beautifulsoup4 @ file:///home/conda/feedstock_root/build_artifacts/beautifulsoup4_1649463573192/work
bio==1.5.3
biopython==1.79
biothings-client==0.2.6
biotite==0.36.1
bleach @ file:///home/conda/feedstock_root/build_artifacts/bleach_1656355450470/work
blis @ file:///home/conda/feedstock_root/build_artifacts/cython-blis_1656314529130/work
bokeh @ file:///home/conda/feedstock_root/build_artifacts/bokeh_1652969581850/work
boto3 @ file:///home/conda/feedstock_root/build_artifacts/boto3_1650696987595/work
botocore @ file:///home/conda/feedstock_root/build_artifacts/botocore_1650663996074/work
brotlipy @ file:///home/conda/feedstock_root/build_artifacts/brotlipy_1648854164373/work
cachetools==5.3.0
captum==0.5.0
catalogue @ file:///home/conda/feedstock_root/build_artifacts/catalogue_1649412147545/work
certifi==2022.6.15
cffi @ file:///home/conda/feedstock_root/build_artifacts/cffi_1656782830073/work
charset-normalizer==2.1.1
click @ file:///home/conda/feedstock_root/build_artifacts/click_1651215153723/work
cloudpickle==2.1.0
cmake==3.26.1
colorama==0.4.3
colorlog==6.7.0
comm==0.1.3
concise==0.6.9
contextlib2==21.6.0
contourpy==1.0.7
cryptography @ file:///home/conda/feedstock_root/build_artifacts/cryptography_1657173995269/work
cycler==0.11.0
cymem @ file:///home/conda/feedstock_root/build_artifacts/cymem_1649412201293/work
dataclasses @ file:///home/conda/feedstock_root/build_artifacts/dataclasses_1628958434797/work
debugpy==1.6.6
decorator==5.1.1
deepspeed==0.5.9
defusedxml @ file:///home/conda/feedstock_root/build_artifacts/defusedxml_1615232257335/work
descartes==1.1.0
dgl==1.1.0+cu116
dglgo==0.0.2
dill==0.3.5.1
dirsync==2.2.5
DLLogger @ git+https://github.com/NVIDIA/dllogger.git@0540a43971f4a8a16693a9de9de73c1072020769
dm-tree==0.1.8
docutils==0.20.1
dparse==0.5.1
einops==0.6.0
entrypoints @ file:///home/conda/feedstock_root/build_artifacts/entrypoints_1643888246732/work
et-xmlfile==1.1.0
executing==1.2.0
fair-esm @ git+https://github.com/facebookresearch/esm.git@900251ba3e2b7cdc06b44b10dfa3a0c1dd49752b
fastai @ file:///home/jhoward/anaconda3/conda-bld/fastai_1608667380828/work
fastcore @ file:///Users/jhoward/mambaforge/conda-bld/fastcore_1658788847717/work
fasteners==0.18
fastjsonschema @ file:///home/conda/feedstock_root/build_artifacts/python-fastjsonschema_1658064924516/work/dist
fastprogress @ file:///home/conda/feedstock_root/build_artifacts/fastprogress_1658690818839/work
filelock==3.10.7
Flask==2.1.3
Flask-RESTful==0.3.9
flatbuffers==22.9.24
flit_core @ file:///home/conda/feedstock_root/build_artifacts/flit-core_1645629044586/work/source/flit_core
fonttools==4.39.3
frozenlist==1.3.3
fsspec==2023.1.0
future @ file:///home/conda/feedstock_root/build_artifacts/future_1649010145299/work
gast==0.4.0
google-auth==2.16.2
google-auth-oauthlib==0.4.6
google-pasta==0.2.0
grpcio==1.50.0
gtfparse==2.0.1
gym==0.23.1
gym-notices==0.0.7
h5py==3.8.0
hjson==3.1.0
horovod==0.25.0
huggingface-hub==0.12.0
hydra-colorlog==1.2.0
hydra-core==1.3.2
idna @ file:///home/conda/feedstock_root/build_artifacts/idna_1642433548627/work
ignite==1.1.0
igraph==0.10.2
imageio @ file:///home/conda/feedstock_root/build_artifacts/imageio_1649747320922/work
imagesize==1.4.1
importlib-metadata==6.1.0
importlib-resources==5.12.0
ipykernel==6.22.0
ipython==8.11.0
ipython-genutils==0.2.0
ipywidgets==8.0.4
isort==5.12.0
itsdangerous==2.1.2
jax @ git+https://github.com/google/jax@c2d6fcc0e6ab34c217ef1969ada30129c6f787cd
jedi==0.18.2
Jinja2==3.1.2
jmespath @ file:///home/conda/feedstock_root/build_artifacts/jmespath_1655568249366/work
joblib==1.2.0
json5 @ file:///home/conda/feedstock_root/build_artifacts/json5_1600692310011/work
jsonschema @ file:///home/conda/feedstock_root/build_artifacts/jsonschema-meta_1657629641118/work
jupyter-server @ file:///home/conda/feedstock_root/build_artifacts/jupyter_server_1657107521771/work
jupyter_client==8.1.0
jupyter_core==5.3.0
jupyterlab @ file:///home/conda/feedstock_root/build_artifacts/jupyterlab_1650038326843/work
jupyterlab-pygments @ file:///home/conda/feedstock_root/build_artifacts/jupyterlab_pygments_1649936611996/work
jupyterlab-server @ file:///home/conda/feedstock_root/build_artifacts/jupyterlab_server_1657063151834/work
jupyterlab-widgets==3.0.5
keras==2.12.0
Keras-Applications==1.0.8
Keras-Preprocessing==1.1.2
kiwisolver==1.4.4
langcodes @ file:///home/conda/feedstock_root/build_artifacts/langcodes_1636741340529/work
leidenalg==0.9.1
Levenshtein==0.20.9
libclang==14.0.6
lightning-utilities==0.7.1
lit==16.0.0
littleutils==0.2.2
llvmlite==0.39.0
logomaker==0.8
Markdown==3.4.1
markdown-it-py==2.2.0
MarkupSafe==2.1.2
matplotlib==3.7.1
matplotlib-inline==0.1.6
matscipy==0.8.0
mdurl==0.1.2
mistune @ file:///home/conda/feedstock_root/build_artifacts/mistune_1635844679781/work
ml-collections==0.1.1
ml-dtypes==0.0.4
mmtf-python==1.1.3
moleculekit==1.6.9
mpmath==1.3.0
msgpack==1.0.4
multidict==6.0.4
munkres==1.1.4
murmurhash @ file:///home/conda/feedstock_root/build_artifacts/murmurhash_1651135363901/work
mygene==3.2.2
natsort==8.2.0
nbclassic @ file:///home/conda/feedstock_root/build_artifacts/nbclassic_1657631862903/work
nbclient @ file:///home/conda/feedstock_root/build_artifacts/nbclient_1656688109017/work
nbconvert @ file:///home/conda/feedstock_root/build_artifacts/nbconvert-meta_1649676641343/work
nbformat @ file:///home/conda/feedstock_root/build_artifacts/nbformat_1651607001005/work
nest-asyncio==1.5.6
networkx==3.0
ninja==1.11.1
notebook-shim @ file:///home/conda/feedstock_root/build_artifacts/notebook-shim_1646330736330/work
numba==0.56.0
numpy==1.22.0
numpydoc==1.5.0
nvgpu==0.9.0
nvidia-cublas-cu11==11.10.3.66
nvidia-cuda-cupti-cu11==11.7.101
nvidia-cuda-nvrtc-cu11==11.7.99
nvidia-cuda-runtime-cu11==11.7.99
nvidia-cudnn-cu11==8.5.0.96
nvidia-cufft-cu11==10.9.0.58
nvidia-curand-cu11==10.2.10.91
nvidia-cusolver-cu11==11.4.0.1
nvidia-cusparse-cu11==11.7.4.91
nvidia-nccl-cu11==2.14.3
nvidia-nvtx-cu11==11.7.91
oauthlib==3.2.2
ogb==1.3.6
omegaconf==2.3.0
openai==0.27.6
openfold @ git+https://github.com/aqlaboratory/openfold.git@4b41059694619831a7db195b7e0988fc4ff3a307
openpyxl==3.0.10
opt-einsum==3.3.0
outdated==0.2.2
packaging==23.0
pandas==1.4.3
pandocfilters @ file:///home/conda/feedstock_root/build_artifacts/pandocfilters_1631603243851/work
parso==0.8.3
pathy @ file:///home/conda/feedstock_root/build_artifacts/pathy_1656568808184/work
patsy @ file:///home/conda/feedstock_root/build_artifacts/patsy_1632667180946/work
pexpect==4.8.0
pickleshare==0.7.5
Pillow==9.4.0
platformdirs==3.2.0
plotly @ file:///home/conda/feedstock_root/build_artifacts/plotly_1644503417459/work
ply==3.11
polars==0.16.16
preshed @ file:///home/conda/feedstock_root/build_artifacts/preshed_1649427193882/work
prometheus-client @ file:///home/conda/feedstock_root/build_artifacts/prometheus_client_1649447152425/work
prompt-toolkit==3.0.38
protobuf==4.22.1
protobuf3-to-dict==0.1.5
psutil==5.9.4
ptflops==0.6.9
ptyprocess==0.7.0
pure-eval==0.2.2
py-cpuinfo==9.0.0
pyahocorasick==2.0.0
pyarrow==8.0.0
pyasn1==0.4.8
pyasn1-modules==0.2.8
pybind11 @ file:///home/conda/feedstock_root/build_artifacts/pybind11-split_1648908988597/work
pybind11-global @ file:///home/conda/feedstock_root/build_artifacts/pybind11-split_1648908988597/work
pycodestyle==2.10.0
pycparser @ file:///home/conda/feedstock_root/build_artifacts/pycparser_1636257122734/work
pydantic @ file:///home/conda/feedstock_root/build_artifacts/pydantic_1653020746401/work
pyfunctional==1.4.3
pygame==2.1.2
Pygments==2.14.0
pynndescent==0.5.7
pynvml==11.4.1
pyOpenSSL @ file:///home/conda/feedstock_root/build_artifacts/pyopenssl_1643496850550/work
pyparsing==3.0.9
PyQt5==5.15.7
PyQt5-sip==12.11.0
pyrsistent @ file:///home/conda/feedstock_root/build_artifacts/pyrsistent_1649013355209/work
PySocks @ file:///home/conda/feedstock_root/build_artifacts/pysocks_1648857263093/work
python-dateutil==2.8.2
python-igraph==0.10.2
pytorch-ignite==0.4.6
pytorch-lightning==2.0.2
pytz==2023.3
PyYAML==6.0
pyzmq==25.0.2
rapidfuzz==2.13.7
rdkit-pypi==2022.9.5
regex==2022.10.31
requests @ file:///home/conda/feedstock_root/build_artifacts/requests_1656534056640/work
requests-oauthlib==1.3.1
rich==13.3.5
rna-fm==0.1.2
rsa @ file:///home/conda/feedstock_root/build_artifacts/rsa_1614171254180/work
ruamel.yaml==0.17.28
ruamel.yaml.clib==0.2.7
s3fs==0.4.2
s3transfer @ file:///home/conda/feedstock_root/build_artifacts/s3transfer_1645745825648/work
safety==1.10.3
sagemaker==2.22.0
scanpy==1.9.2
schnetpack==2.0.3
scikit-learn==0.24.0
scipy==1.10.1
seaborn==0.12.2
Send2Trash @ file:///home/conda/feedstock_root/build_artifacts/send2trash_1628511208346/work
sentencepiece==0.1.97
session-info==1.0.0
shap==0.40.0
shapely==2.0.1
shellingham @ file:///home/conda/feedstock_root/build_artifacts/shellingham_1612179560728/work
sip @ file:///home/conda/feedstock_root/build_artifacts/sip_1655764895156/work
six @ file:///home/conda/feedstock_root/build_artifacts/six_1620240208055/work
sklearn==0.0
slicer==0.0.7
smart-open @ file:///home/conda/feedstock_root/build_artifacts/smart_open_1630238320325/work
smclarify==0.2
smdebug-rulesconfig==1.0.0
sniffio @ file:///home/conda/feedstock_root/build_artifacts/sniffio_1648819188507/work
snowballstemmer==2.2.0
soupsieve @ file:///home/conda/feedstock_root/build_artifacts/soupsieve_1658207591808/work
spacy @ file:///home/conda/feedstock_root/build_artifacts/spacy_1657649068841/work
spacy-legacy @ file:///home/conda/feedstock_root/build_artifacts/spacy-legacy_1645713043381/work
spacy-loggers @ file:///home/conda/feedstock_root/build_artifacts/spacy-loggers_1648794027183/work
Sphinx==7.0.1
sphinxcontrib-applehelp==1.0.4
sphinxcontrib-devhelp==1.0.2
sphinxcontrib-htmlhelp==2.0.1
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-qthelp==1.0.3
sphinxcontrib-serializinghtml==1.1.5
srsly @ file:///home/conda/feedstock_root/build_artifacts/srsly_1658344395284/work
stack-data==0.6.2
statsmodels @ file:///home/conda/feedstock_root/build_artifacts/statsmodels_1654787094041/work
stdlib-list==0.8.0
sympy==1.11.1
tabulate==0.8.10
tenacity @ file:///home/conda/feedstock_root/build_artifacts/tenacity_1626090218611/work
tensorboard==2.12.0
tensorboard-data-server==0.7.0
tensorboard-plugin-wit==1.8.1
tensorflow==2.12.0
tensorflow-estimator==2.12.0
tensorflow-io-gcs-filesystem==0.27.0
termcolor==1.1.0
terminado @ file:///home/conda/feedstock_root/build_artifacts/terminado_1652790619444/work
texttable==1.6.7
thinc @ file:///home/conda/feedstock_root/build_artifacts/thinc_1657300567511/work
threadpoolctl==3.1.0
tinycss2 @ file:///home/conda/feedstock_root/build_artifacts/tinycss2_1637612658783/work
toml @ file:///home/conda/feedstock_root/build_artifacts/toml_1604308577558/work
tomli==2.0.1
torch==1.13.1
torch-ema==0.3
torch-geometric==2.2.0
torch-model-archiver @ file:///home/ubuntu/anaconda3/envs/py38/conda-bld/torch-model-archiver_1645846597533/work
torch-scatter==2.1.0
torch-sparse==0.6.16
torch-workflow-archiver @ file:///home/ubuntu/anaconda3/envs/py38/conda-bld/torch-workflow-archiver_1652462579732/work
torchaudio==2.0.1
torchmd==1.0.0
torchmd-cg==0.0.2
torchmetrics==0.11.3
torchserve @ file:///home/ubuntu/anaconda3/envs/py38/conda-bld/torchserve_1652462046145/work
torchsummary==1.5.1
torchtext==0.13.0
torchvision==0.15.1
tornado==6.2
tqdm==4.62.0
traitlets==5.9.0
triton==2.0.0
typer @ file:///home/conda/feedstock_root/build_artifacts/typer_1657029164904/work
typing_extensions==4.5.0
tzdata==2023.3
umap-learn==0.5.3
unicodedata2 @ file:///home/conda/feedstock_root/build_artifacts/unicodedata2_1649111919389/work
urllib3 @ file:///home/conda/feedstock_root/build_artifacts/urllib3_1658789158161/work
wasabi @ file:///home/conda/feedstock_root/build_artifacts/wasabi_1648654410720/work
wcwidth==0.2.6
webencodings==0.5.1
websocket-client @ file:///home/conda/feedstock_root/build_artifacts/websocket-client_1655796432389/work
Werkzeug==2.2.0
widgetsnbextension==4.0.5
wrapt==1.14.1
yacs==0.1.8
yarl==1.8.2
zipp==3.15.0