From 53b55b2e2a651632c29d2ff673ac443ea21bba41 Mon Sep 17 00:00:00 2001 From: Rebecca Pfeil Date: Mon, 30 Oct 2023 17:22:11 +0200 Subject: [PATCH] added illumina bam for bam file input --- src/input_data_storage.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/input_data_storage.py b/src/input_data_storage.py index d0c4cfc7..2d40c8d3 100644 --- a/src/input_data_storage.py +++ b/src/input_data_storage.py @@ -98,8 +98,8 @@ def __init__(self, args): sample_files[0].append([bam]) readable_names_dict[experiment_name][bam] = args.labels[i] if args.labels else \ os.path.splitext(os.path.basename(bam))[0] + illumina_bam.append(args.illumina_bam) - elif args.fastq_list is not None: self.input_type = "fastq" sample_files, experiment_names, readable_names_dict, illumina_bam = self.get_samples_from_file(args.fastq_list)