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filterReads.sublime-workspace
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{
"auto_complete":
{
"selected_items":
[
[
"reads_",
"reads_total"
],
[
"filter",
"filtering"
],
[
"reads",
"reads_total"
],
[
"min",
"min_length"
],
[
"c",
"class\tNew Class"
],
[
"comple",
"complement\t(summarizeNucleotideByReadLenght.py)"
],
[
"Alignm",
"alignments"
],
[
"out",
"out_file"
],
[
"st",
"stdout"
],
[
"se",
"seq"
],
[
"seq",
"seq_l"
],
[
"RPM",
"RPM_Ratio"
],
[
"rmp",
"rpms_c"
],
[
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"rpms",
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"small",
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[
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"countdata_m"
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[
"count",
"countdata"
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[
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],
[
"summar",
"summarize\t{dplyr}"
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[
"facte",
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],
[
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[
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[
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[
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[
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[
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[
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[
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[
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[
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[
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[
"Cuff",
"CuffDiff2"
],
[
"cuff_",
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],
[
"loge",
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[
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[
"ensem",
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],
[
"cuff",
"cuffdiff2"
],
[
"gtf",
"gtf_file"
],
[
"ref",
"refseq_mrna"
],
[
"resc",
"resuc1"
],
[
"facto",
"factor"
],
[
"if",
"ifelse"
],
[
"pad",
"padjust"
],
[
"geom",
"geom_bar"
],
[
"base",
"baseMean"
],
[
"expe",
"expected"
],
[
"p",
"pvalue"
],
[
"table",
"table_fisher"
],
[
"chro",
"chromosome"
],
[
"chromo",
"chromosome"
],
[
"retu",
"return"
],
[
"mat",
"matrix"
],
[
"len",
"length"
],
[
"dv",
"david_table"
],
[
"organis",
"organism=\"zebrafish"
],
[
"padj",
"padj"
],
[
"up",
"up_go"
],
[
"dev",
"devtools"
],
[
"pa",
"packages"
],
[
"ins",
"install"
],
[
"group",
"groupID"
],
[
"list",
"listType"
],
[
"wri",
"write.table"
],
[
"spl",
"splitPlus"
],
[
"col",
"colnames"
],
[
"cluster",
"clusterProfiler"
],
[
"enrich",
"enrichDAVID"
],
[
"dupl",
"duplicated"
],
[
"ex",
"exon"
],
[
"dxd",
"dxdr2"
],
[
"bins",
"bins_subset"
],
[
"fullmode",
"full_model"
],
[
"redu",
"reduced_model"
],
[
"full",
"full_model"
],
[
"sampl",
"sample"
],
[
"FUs",
"FUS_kd"
],
[
"con",
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],
[
"session",
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],
[
"fact",
"factor"
],
[
"dxdr",
"dxdrdf"
],
[
"splicin",
"splicing=FALSE"
],
[
"disp",
"displayTranscripts=TRUE"
],
[
"DEx",
"DEXSeqResults"
],
[
"plotD",
"plotDispEsts"
],
[
"estima",
"estimateDispersions"
],
[
"est",
"estimateSizeFactors"
],
[
"files",
"files"
],
[
"coun",
"count"
],
[
"mas",
"mass"
],
[
"pro",
"protein"
],
[
"protein",
"protein_ids"
],
[
"fold",
"fold_change_nowash"
],
[
"Pro",
"Process"
],
[
"Com",
"Compartment"
],
[
"Mel",
"Molecular"
],
[
"Run",
"Run_1"
],
[
"Run_",
"Run_1"
],
[
"figure",
"figure"
],
[
"count_",
"count_cor_p"
],
[
"vsd",
"vsd_all"
],
[
"row",
"rownames"
],
[
"vs",
"vsd_2"
]
]
},
"buffers":
[
{
"file": "README.md",
"settings":
{
"buffer_size": 496,
"encoding": "UTF-8",
"line_ending": "Unix"
}
},
{
"file": "docs/notes.md",
"settings":
{
"buffer_size": 4437,
"encoding": "UTF-8",
"line_ending": "Unix",
"name": "# filter with bed file"
}
},
{
"file": "filterReads/summarizeNucleotideByReadLenght.py",
"settings":
{
"buffer_size": 1771,
"encoding": "UTF-8",
"line_ending": "Unix"
}
},
{
"file": "filterReads/filterSmallRNAclasses.py",
"settings":
{
"buffer_size": 3764,
"encoding": "UTF-8",
"line_ending": "Unix"
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},
{
"file": "filterReads/test_filter.py",
"settings":
{
"buffer_size": 2250,
"encoding": "UTF-8",
"line_ending": "Unix"
}
}
],
"build_system": "",
"build_system_choices":
[
],
"build_varint": "",
"command_palette":
{
"height": 244.0,
"last_filter": "quik ",
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[
"quik ",
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],
[
"comment",
"DoxyDoxygen: Comment All"
],
[
"rena",
"File: Rename"
],
[
"move",
"File: Move"
],
[
"commen",
"Snippet: R Comments - Section Comment Block"
],
[
"comit",
"Git: Quick Commit Current File"
],
[
"comm",
"Git: Quick Commit Current File"
],
[
"hg",
"SublimeHg: Open Menu"
],
[
"commi",
"Git: Quick Commit Current File"
],
[
"Snippet: shell",
"Snippet: md_introduced_shell_chunk"
],
[
"html",
"SublimeHighlight: view as HTML"
],
[
"ins",
"Package Control: Install Package"
],
[
"inst",
"Package Control: Install Package"
],
[
"remo",
"Package Control: Remove Package"
],
[
"insta",
"Package Control: Install Package"
],
[
"repo",
"Package Control: Add Repository"
],
[
"up",
"Package Control: Upgrade Package"
],
[
"in",
"Package Control: Install Package"
],
[
"instal",
"Package Control: Install Package"
],
[
"Package Control: ",
"Package Control: Install Package"
],
[
"R-bo",
"R-Box Application"
],
[
"knitr",
"knitr: Move to Next Chunk"
]
],
"width": 641.0
},
"console":
{
"height": 139.0,
"history":
[
"import urllib.request,os,hashlib; h = '2915d1851351e5ee549c20394736b442' + '8bc59f460fa1548d1514676163dafc88'; pf = 'Package Control.sublime-package'; ipp = sublime.installed_packages_path(); urllib.request.install_opener( urllib.request.build_opener( urllib.request.ProxyHandler()) ); by = urllib.request.urlopen( 'http://packagecontrol.io/' + pf.replace(' ', '%20')).read(); dh = hashlib.sha256(by).hexdigest(); print('Error validating download (got %s instead of %s), please try manual install' % (dh, h)) if dh != h else open(os.path.join( ipp, pf), 'wb' ).write(by)",
"sublime.log_commands(True)"
]
},
"distraction_free":
{
"menu_visible": true,
"show_minimap": false,
"show_open_files": false,
"show_tabs": false,
"side_bar_visible": false,
"status_bar_visible": false
},
"expanded_folders":
[
"/home/adomingu/imbc1/adomingues/projects/filterReads",
"/home/adomingu/imbc1/adomingues/projects/filterReads/filterReads"
],
"file_history":
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"/home/adomingu/imbc1/adomingues/projects/notebook/doc/celegans_pipeline.md",
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