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From GENIE3 to tree diagrams #16

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Su870 opened this issue Feb 15, 2023 · 0 comments
Open

From GENIE3 to tree diagrams #16

Su870 opened this issue Feb 15, 2023 · 0 comments

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@Su870
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Su870 commented Feb 15, 2023

Hello,

I have recently ran GRNBoost2 during my pySCENIC pipeline and was wondering how I could get the visualization tree diagrams?

This is the code that I used to get the grnboost2 results:
pyscenic grn geneexp_scenic.loom allTFs_hg38.txt --method grnboost2 --output adj.tsv --num_workers 20

The output file adj.tsv has the 3 columns named: TF, Target, and Importance.
image

I am wondering how I can create the tree diagrams and heat maps from the adj.tsv file?
image

Thanks!

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