We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Hi!
I'm trying to visualize my top eRegulons with the jaccard_heatmap function (following 10X multiome pbmc tutorial).
My code is here:
from scenicplus.plotting.correlation_plot import * region_intersetc_data, Z = jaccard_heatmap(scplus_obj, method = 'intersect', gene_or_region_based = 'Region_based', use_plotly = False, selected_regulons = selected_markers, signature_key = 'eRegulon_signatures_filtered', figsize = (10, 10), return_data = True, vmax = 0.5, cmap = 'plasma')
When I save with plt.savefig the image just shows the last plot generated. Can someone help me generate this heatmap? Thank you!
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Hi!
I'm trying to visualize my top eRegulons with the jaccard_heatmap function (following 10X multiome pbmc tutorial).
My code is here:
When I save with plt.savefig the image just shows the last plot generated. Can someone help me generate this heatmap? Thank you!
The text was updated successfully, but these errors were encountered: