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shiny::runApp NOT FOUND #455

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TZUwang opened this issue May 23, 2024 · 1 comment

TZUwang commented May 23, 2024 •

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scenicOptions <- runSCENIC_1_coexNetwork2modules(scenicOptions)
scenicOptions <- runSCENIC_2_createRegulons(scenicOptions, coexMethod=c("top5perTarget"))
scenicOptions <- runSCENIC_3_scoreCells(scenicOptions, exprMat_log)
scenicOptions <- runSCENIC_4_aucell_binarize(scenicOptions)

tsneAUC(scenicOptions, aucType="AUC")
[1] "int/tSNE_AUC_50pcs_30perpl.Rds"

This is the file I generated

str(aucellApp)
List of 3
$ thresholds: Named num [1:40] 0.0224 0.0347 0.0524 0.0353 0.2378 ...
..- attr(*, "names")= chr [1:40] "E2f7 (39g)" "E2f8 (20g)" "Tfdp1 (11g)" "E2f1 (42g)" ...
$ cells : list()
$ server :function (input, output, session)

I don't know why i use

aucellApp <- plotTsne_AUCellApp(scenicOptions, exprMat_log)
savedSelections <- shiny::runApp(aucellApp)

TZUwang changed the title ~~Error in .local(object, ...) : File '' does not exist.~~ shiny::runApp NOT FOUND

Member

ghuls commented Jul 8, 2024

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