CI.yml

# This file is autogenerated by maturin v1.7.0
# To update, run
#
#    maturin generate-ci github --zig --pytest --platform manylinux macos
#
name: CI

on:
  push:
    branches:
      - main
      - master
    tags:
      - '*'
  pull_request:
  workflow_dispatch:

permissions:
  contents: read

jobs:
  linux:
    runs-on: ${{ matrix.platform.runner }}
    strategy:
      matrix:
        platform:
          - runner: ubuntu-latest
            target: x86_64
          - runner: ubuntu-latest
            target: aarch64
          - runner: ubuntu-latest
            target: armv7
    steps:
      - uses: actions/checkout@v4
      - uses: actions/setup-python@v5
        with:
          python-version: 3.x
      - name: Build wheels
        uses: PyO3/maturin-action@v1
        with:
          target: ${{ matrix.platform.target }}
          args: --release --out dist --zig
          sccache: 'true'
          manylinux: auto
      - name: Upload wheels
        uses: actions/upload-artifact@v4
        with:
          name: wheels-linux-${{ matrix.platform.target }}
          path: dist
      - name: pytest
        if: ${{ startsWith(matrix.platform.target, 'x86_64') }}
        shell: bash
        run: |
          set -e
          python3 -m venv .venv
          source .venv/bin/activate
          pip install scatac_fragment_tools --find-links dist --force-reinstall
          pip install pytest
          pytest
      - name: pytest
        if: ${{ !startsWith(matrix.platform.target, 'x86') && matrix.platform.target != 'ppc64' }}
        uses: uraimo/run-on-arch-action@v2
        with:
          arch: ${{ matrix.platform.target }}
          distro: ubuntu22.04
          githubToken: ${{ github.token }}
          install: |
            apt-get update
            apt-get install -y --no-install-recommends python3 python3-pip gcc
            pip3 install -U pip pytest
          run: |
            set -e
            pip3 install scatac_fragment_tools --find-links dist --force-reinstall
            pytest

  macos:
    runs-on: ${{ matrix.platform.runner }}
    strategy:
      matrix:
        platform:
          - runner: macos-12
            target: x86_64
          - runner: macos-14
            target: aarch64
    steps:
      - uses: actions/checkout@v4
      - uses: actions/setup-python@v5
        with:
          python-version: 3.x
      - name: Build wheels
        uses: PyO3/maturin-action@v1
        with:
          target: ${{ matrix.platform.target }}
          args: --release --out dist
          sccache: 'true'
      - name: Upload wheels
        uses: actions/upload-artifact@v4
        with:
          name: wheels-macos-${{ matrix.platform.target }}
          path: dist
      - name: pytest
        run: |
          set -e
          python3 -m venv .venv
          source .venv/bin/activate
          pip install scatac_fragment_tools --find-links dist --force-reinstall
          pip install pytest
          pytest

  sdist:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - name: Build sdist
        uses: PyO3/maturin-action@v1
        with:
          command: sdist
          args: --out dist
      - name: Upload sdist
        uses: actions/upload-artifact@v4
        with:
          name: wheels-sdist
          path: dist

  release:
    name: Release
    runs-on: ubuntu-latest
    if: "startsWith(github.ref, 'refs/tags/')"
    needs: [linux, macos, sdist]
    steps:
      - uses: actions/download-artifact@v4
      - name: Publish to PyPI
        uses: PyO3/maturin-action@v1
        env:
          MATURIN_PYPI_TOKEN: ${{ secrets.PYPI_API_TOKEN }}
        with:
          command: upload
          args: --non-interactive --skip-existing wheels-*/*