From 408df90042f3d558902cfb5a4b609b7d6e7f6d2b Mon Sep 17 00:00:00 2001 From: Ceceliachenen Date: Thu, 12 Dec 2024 14:33:49 +0800 Subject: [PATCH] Update mineru (#306) * update mineru * update mineru * update mineru * fix markdown test case * fix gpu test cases * fix gpu test cases * update mode_dir_name --- magic-pdf.gpu.template.json | 17 +- magic-pdf.template.json | 17 +- poetry.lock | 4162 +++++++++-------- pyproject.toml | 4 +- pyproject_gpu.toml | 4 +- .../integrations/readers/pai_pdf_reader.py | 12 +- src/pai_rag/utils/constants.py | 2 +- src/pai_rag/utils/download_models.py | 14 +- tests/core/test_rag_application.py | 30 +- tests/data_readers/test_csv_reader.py | 22 +- tests/data_readers/test_excel_reader.py | 14 +- tests/data_readers/test_html_reader.py | 14 +- tests/data_readers/test_jsonl_reader.py | 14 +- tests/data_readers/test_pdf_reader.py | 19 +- .../integrations/test_markdown_mode_parser.py | 13 +- .../test_post_process_multi_level_headings.py | 10 +- 16 files changed, 2405 insertions(+), 1963 deletions(-) diff --git a/magic-pdf.gpu.template.json b/magic-pdf.gpu.template.json index 419c0003..dd5c2756 100644 --- a/magic-pdf.gpu.template.json +++ b/magic-pdf.gpu.template.json @@ -3,10 +3,21 @@ "bucket-name-1": ["ak", "sk", "endpoint"], "bucket-name-2": ["ak", "sk", "endpoint"] }, - "models-dir": "/tmp/models", + "models-dir": "model_repository/PDF-Extract-Kit/models", + "layoutreader-model-dir": "model_repository/PDF-Extract-Kit/models/layoutreader", "device-mode": "cuda", + "layout-config": { + "model": "doclayout_yolo" + }, + "formula-config": { + "mfd_model": "yolo_v8_mfd", + "mfr_model": "unimernet_small", + "enable": true + }, "table-config": { - "is_table_recog_enable": false, + "model": "rapid_table", + "enable": false, "max_time": 400 - } + }, + "config_version": "1.0.0" } diff --git a/magic-pdf.template.json b/magic-pdf.template.json index fca84f97..e6d5c3e2 100644 --- a/magic-pdf.template.json +++ b/magic-pdf.template.json @@ -3,10 +3,21 @@ 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"sha256:1090c60116b3da3bfdd0c03406e2f14a1ff53e5771aebe33fec1edc0a350175d"}, + {file = "zope.interface-7.2.tar.gz", hash = "sha256:8b49f1a3d1ee4cdaf5b32d2e738362c7f5e40ac8b46dd7d1a65e82a4872728fe"}, ] [package.dependencies] @@ -10991,4 +11357,4 @@ testing = ["coverage[toml]", "zope.event", "zope.testing"] [metadata] lock-version = "2.0" python-versions = ">=3.11.0,<3.12" -content-hash = "f3700b17746f583513f150e79bb0d56ec974d23609b6142d65c36b372eccffc3" +content-hash = "460c8c57fe8f1d6a2ffe86f02fbfdc5ef1d97c59d76309efefef00225a1ebd4f" diff --git a/pyproject.toml b/pyproject.toml index c38c70a7..cfb54dfc 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -50,7 +50,7 @@ torchvision = [ {version = "0.18.0+cpu", source = "pytorch_cpu", markers = "sys_platform != 'darwin'"}, {version = "0.17.2", markers = "sys_platform == 'darwin'"} ] -transformers = "4.40.0" +transformers = "4.42.4" openpyxl = "^3.1.2" pdf2image = "^1.17.0" llama-index-storage-chat-store-redis = "^0.1.3" @@ -96,7 +96,7 @@ detectron2 = [ {markers = "sys_platform == 'win32'", url = "https://pai-rag.oss-cn-hangzhou.aliyuncs.com/packages/python_wheels/detectron2-0.6%2B864913fpt2.3.0cpu-cp311-cp311-win_amd64.whl"}, {markers = "sys_platform != 'win32' and sys_platform != 'linux' ", url = "https://pai-rag.oss-cn-hangzhou.aliyuncs.com/packages/python_wheels/detectron2-0.6%2B864913fpt2.2.2cpu-cp311-cp311-macosx_10_9_universal2.whl"} ] -magic-pdf = {version = "0.7.0b1", extras = ["full"]} +magic-pdf = {version = "0.10.5", extras = ["full"]} peft = "^0.12.0" duckduckgo-search = "6.2.12" aliyun-bootstrap = "1.0.2" diff --git a/pyproject_gpu.toml b/pyproject_gpu.toml index 1f0a255e..24cf0c08 100644 --- a/pyproject_gpu.toml +++ b/pyproject_gpu.toml @@ -44,7 +44,7 @@ asgi-correlation-id = "^4.3.1" openinference-instrumentation-llama-index = "^2.2.1" torch = "2.2.2" torchvision = "0.17.2" -transformers = "4.40.0" +transformers = "4.42.4" openpyxl = "^3.1.2" pdf2image = "^1.17.0" llama-index-storage-chat-store-redis = "^0.1.3" @@ -90,7 +90,7 @@ detectron2 = [ {markers = "sys_platform == 'win32'", url = "https://pai-rag.oss-cn-hangzhou.aliyuncs.com/packages/python_wheels/detectron2-0.6%2B864913fpt2.3.0cu121-cp311-cp311-win_amd64.whl"}, {markers = "sys_platform != 'win32' and sys_platform != 'linux' ", url = "https://pai-rag.oss-cn-hangzhou.aliyuncs.com/packages/python_wheels/detectron2-0.6%2B864913fpt2.2.2cpu-cp311-cp311-macosx_10_9_universal2.whl"} ] -magic-pdf = {version = "0.7.0b1", extras = ["full"]} +magic-pdf = {version = "0.10.5", extras = ["full"]} paddlepaddle-gpu = [ {markers = "sys_platform == 'linux'", url = "https://pai-rag.oss-cn-hangzhou.aliyuncs.com/packages/python_wheels/paddlepaddle_gpu-3.0.0b1-cp311-cp311-linux_x86_64.whl"}, {markers = "sys_platform != 'linux'", url = "https://pai-rag.oss-cn-hangzhou.aliyuncs.com/packages/python_wheels/paddlepaddle_gpu-3.0.0b1-cp311-cp311-win_amd64.whl"} diff --git a/src/pai_rag/integrations/readers/pai_pdf_reader.py b/src/pai_rag/integrations/readers/pai_pdf_reader.py index 42f55827..2306ba73 100644 --- a/src/pai_rag/integrations/readers/pai_pdf_reader.py +++ b/src/pai_rag/integrations/readers/pai_pdf_reader.py @@ -4,7 +4,7 @@ from typing import Dict, List, Optional, Union, Any from llama_index.core.readers.base import BaseReader from llama_index.core.schema import Document -from magic_pdf.rw.DiskReaderWriter import DiskReaderWriter +from magic_pdf.data.data_reader_writer import FileBasedDataWriter from pai_rag.utils.markdown_utils import ( transform_local_to_oss, is_horizontal_table, @@ -292,7 +292,7 @@ def parse_pdf( model_json = [] # 执行解析步骤 - image_writer = DiskReaderWriter(temp_file_path) + image_writer = FileBasedDataWriter(temp_file_path) # 选择解析方式 if parse_method == "auto": @@ -308,12 +308,8 @@ def parse_pdf( pipe.pipe_classify() # 如果没有传入模型数据，则使用内置模型解析 - if not model_json: - if model_config.__use_inside_model__: - pipe.pipe_analyze() # 解析 - else: - logger.error("need model list input") - exit(1) + if len(model_json) == 0: + pipe.pipe_analyze() # 解析 # 执行解析 pipe.pipe_parse() diff --git a/src/pai_rag/utils/constants.py b/src/pai_rag/utils/constants.py index 84a70560..584ac691 100644 --- a/src/pai_rag/utils/constants.py +++ b/src/pai_rag/utils/constants.py @@ -10,7 +10,7 @@ DEFAULT_BREAKPOINT = 95 DEFAULT_BUFFER_SIZE = 1 -EAS_DEFAULT_MODEL_DIR = "/huggingface/pai_rag_model_repository" +EAS_DEFAULT_MODEL_DIR = "/huggingface/pai_rag_model_repository_01" if not os.path.exists(EAS_DEFAULT_MODEL_DIR): DEFAULT_MODEL_DIR = "./model_repository" else: diff --git a/src/pai_rag/utils/download_models.py b/src/pai_rag/utils/download_models.py index e128eb2a..d78dc5b9 100644 --- a/src/pai_rag/utils/download_models.py +++ b/src/pai_rag/utils/download_models.py @@ -82,19 +82,17 @@ def load_mineru_config(self): source_path = "magic-pdf.template.json" destination_path = os.path.expanduser("~/magic-pdf.json") # 目标路径 - if os.path.exists(destination_path): - logger.info( - "magic-pdf.json already exists, skip modifying ~/magic-pdf.json." - ) - return - # 读取 source_path 文件的内容 with open(source_path, "r") as source_file: data = json.load(source_file) # 加载 JSON 数据 if "models-dir" in data: - data["models-dir"] = ( - str(self.download_directory_path) + "/PDF-Extract-Kit/models" + data["models-dir"] = os.path.join( + str(self.download_directory_path), "PDF-Extract-Kit/models" + ) + if "layoutreader-model-dir" in data: + data["layoutreader-model-dir"] = os.path.join( + str(self.download_directory_path), "PDF-Extract-Kit/models/layoutreader" ) # 将修改后的内容写入destination_path diff --git a/tests/core/test_rag_application.py b/tests/core/test_rag_application.py index 0e7fda2b..a22febaf 100644 --- a/tests/core/test_rag_application.py +++ b/tests/core/test_rag_application.py @@ -1,11 +1,8 @@ import asyncio import os from pathlib import Path -from pai_rag.app.api.models import RagQuery import pytest import shutil -from pai_rag.core.rag_application import RagApplication, RagChatType -from pai_rag.core.rag_config_manager import RagConfigManager BASE_DIR = Path(__file__).parent.parent.parent TEST_INDEX_PATH = "localdata/teststorage" @@ -13,8 +10,17 @@ EXPECTED_EMPTY_RESPONSE = """Empty query. Please input your question.""" +pytestmark = pytest.mark.skipif( + os.getenv("SKIP_GPU_TESTS", "false") == "true", + reason="Need to execute in a CUDA environment.", +) + + @pytest.fixture(scope="module", autouse=True) def rag_app(): + from pai_rag.core.rag_application import RagApplication + from pai_rag.core.rag_config_manager import RagConfigManager + config_file = os.path.join(BASE_DIR, "src/pai_rag/config/settings.toml") config = RagConfigManager.from_file(config_file).get_value() @@ -31,7 +37,10 @@ def rag_app(): # Test rag query -def test_query(rag_app: RagApplication): +def test_query(rag_app): + from pai_rag.app.api.models import RagQuery + from pai_rag.core.rag_application import RagChatType + query = RagQuery(question="Why did he decide to learn AI?") response = asyncio.run(rag_app.aquery(query, chat_type=RagChatType.RAG)) assert len(response.answer) > 10 and response.answer != "Empty Response" @@ -42,7 +51,10 @@ def test_query(rag_app: RagApplication): # Test llm query -def test_llm(rag_app: RagApplication): +def test_llm(rag_app): + from pai_rag.app.api.models import RagQuery + from pai_rag.core.rag_application import RagChatType + query = RagQuery(question="What is the result of 15+22?") response = asyncio.run(rag_app.aquery(query, chat_type=RagChatType.LLM)) assert "37" in response.answer @@ -53,7 +65,9 @@ def test_llm(rag_app: RagApplication): # Test retrieval query -def test_retrieval(rag_app: RagApplication): +def test_retrieval(rag_app): + from pai_rag.app.api.models import RagQuery + retrieval_query = RagQuery(question="Why did he decide to learn AI?") response = asyncio.run(rag_app.aretrieve(retrieval_query)) assert len(response.docs) > 0 @@ -64,7 +78,9 @@ def test_retrieval(rag_app: RagApplication): # Test agent query -def test_agent(rag_app: RagApplication): +def test_agent(rag_app): + from pai_rag.app.api.models import RagQuery + query = RagQuery(question="What is the result of 15+22?") response = asyncio.run(rag_app.aquery_agent(query)) assert "37" in response.answer diff --git a/tests/data_readers/test_csv_reader.py b/tests/data_readers/test_csv_reader.py index faec65d6..eaa450ce 100644 --- a/tests/data_readers/test_csv_reader.py +++ b/tests/data_readers/test_csv_reader.py @@ -1,14 +1,23 @@ import os from pathlib import Path -from pai_rag.core.rag_config_manager import RagConfigManager -from pai_rag.core.rag_module import resolve -from pai_rag.integrations.readers.pai.pai_data_reader import PaiDataReader -from pai_rag.integrations.readers.pai_csv_reader import PaiCSVReader, PaiPandasCSVReader +import pytest BASE_DIR = Path(__file__).parent.parent.parent +pytestmark = pytest.mark.skipif( + os.getenv("SKIP_GPU_TESTS", "false") == "true", + reason="Need to execute in a CUDA environment.", +) + + +@pytest.fixture(scope="module", autouse=True) def test_csv_reader(): + from pai_rag.core.rag_config_manager import RagConfigManager + from pai_rag.core.rag_module import resolve + from pai_rag.integrations.readers.pai.pai_data_reader import PaiDataReader + from pai_rag.integrations.readers.pai_csv_reader import PaiCSVReader + config_file = os.path.join(BASE_DIR, "src/pai_rag/config/settings.toml") config = RagConfigManager.from_file(config_file).get_value() directory_reader = resolve( @@ -28,6 +37,11 @@ def test_csv_reader(): def test_pandas_csv_reader(): + from pai_rag.core.rag_config_manager import RagConfigManager + from pai_rag.core.rag_module import resolve + from pai_rag.integrations.readers.pai.pai_data_reader import PaiDataReader + from pai_rag.integrations.readers.pai_csv_reader import PaiPandasCSVReader + config_file = os.path.join(BASE_DIR, "src/pai_rag/config/settings.toml") config = RagConfigManager.from_file(config_file).get_value() directory_reader = resolve( diff --git a/tests/data_readers/test_excel_reader.py b/tests/data_readers/test_excel_reader.py index be5182de..02a0bffc 100644 --- a/tests/data_readers/test_excel_reader.py +++ b/tests/data_readers/test_excel_reader.py @@ -1,14 +1,20 @@ import os from pathlib import Path -from pai_rag.core.rag_config_manager import RagConfigManager -from pai_rag.core.rag_module import resolve -from pai_rag.integrations.readers.pai.pai_data_reader import PaiDataReader -from pai_rag.integrations.readers.pai_excel_reader import PaiPandasExcelReader +import pytest BASE_DIR = Path(__file__).parent.parent.parent +@pytest.mark.skipif( + os.getenv("SKIP_GPU_TESTS", "false") == "true", + reason="Need to execute in a CUDA environment.", +) def test_pandas_excel_reader(): + from pai_rag.core.rag_config_manager import RagConfigManager + from pai_rag.core.rag_module import resolve + from pai_rag.integrations.readers.pai.pai_data_reader import PaiDataReader + from pai_rag.integrations.readers.pai_excel_reader import PaiPandasExcelReader + config_file = os.path.join(BASE_DIR, "src/pai_rag/config/settings.toml") config = RagConfigManager.from_file(config_file).get_value() directory_reader = resolve( diff --git a/tests/data_readers/test_html_reader.py b/tests/data_readers/test_html_reader.py index f4e8f228..6ab0197d 100644 --- a/tests/data_readers/test_html_reader.py +++ b/tests/data_readers/test_html_reader.py @@ -1,14 +1,20 @@ import os from pathlib import Path -from pai_rag.core.rag_config_manager import RagConfigManager -from pai_rag.core.rag_module import resolve -from pai_rag.integrations.readers.pai.pai_data_reader import PaiDataReader -from pai_rag.integrations.readers.pai_html_reader import PaiHtmlReader +import pytest BASE_DIR = Path(__file__).parent.parent.parent +@pytest.mark.skipif( + os.getenv("SKIP_GPU_TESTS", "false") == "true", + reason="Need to execute in a CUDA environment.", +) def test_pai_html_reader(): + from pai_rag.core.rag_config_manager import RagConfigManager + from pai_rag.core.rag_module import resolve + from pai_rag.integrations.readers.pai.pai_data_reader import PaiDataReader + from pai_rag.integrations.readers.pai_html_reader import PaiHtmlReader + config_file = os.path.join(BASE_DIR, "src/pai_rag/config/settings.toml") config = RagConfigManager.from_file(config_file).get_value() directory_reader = resolve( diff --git a/tests/data_readers/test_jsonl_reader.py b/tests/data_readers/test_jsonl_reader.py index 97adff1b..68af3e32 100644 --- a/tests/data_readers/test_jsonl_reader.py +++ b/tests/data_readers/test_jsonl_reader.py @@ -1,14 +1,20 @@ import os from pathlib import Path -from pai_rag.core.rag_config_manager import RagConfigManager -from pai_rag.core.rag_module import resolve -from pai_rag.integrations.readers.pai.pai_data_reader import PaiDataReader -from pai_rag.integrations.readers.pai_jsonl_reader import PaiJsonLReader +import pytest BASE_DIR = Path(__file__).parent.parent.parent +@pytest.mark.skipif( + os.getenv("SKIP_GPU_TESTS", "false") == "true", + reason="Need to execute in a CUDA environment.", +) def test_jsonl_reader(): + from pai_rag.core.rag_config_manager import RagConfigManager + from pai_rag.core.rag_module import resolve + from pai_rag.integrations.readers.pai.pai_data_reader import PaiDataReader + from pai_rag.integrations.readers.pai_jsonl_reader import PaiJsonLReader + config_file = os.path.join(BASE_DIR, "src/pai_rag/config/settings.toml") config = RagConfigManager.from_file(config_file).get_value() directory_reader = resolve( diff --git a/tests/data_readers/test_pdf_reader.py b/tests/data_readers/test_pdf_reader.py index aa17d195..91562324 100644 --- a/tests/data_readers/test_pdf_reader.py +++ b/tests/data_readers/test_pdf_reader.py @@ -1,22 +1,23 @@ import os from pathlib import Path - import pytest -from pai_rag.core.rag_config_manager import RagConfigManager -from pai_rag.core.rag_module import resolve -from pai_rag.integrations.readers.pai.pai_data_reader import PaiDataReader -from pai_rag.integrations.readers.pai_pdf_reader import PaiPDFReader -from pai_rag.utils.download_models import ModelScopeDownloader -from pai_rag.utils.markdown_utils import is_horizontal_table BASE_DIR = Path(__file__).parent.parent.parent -@pytest.mark.skipif( +pytestmark = pytest.mark.skipif( os.getenv("SKIP_GPU_TESTS", "false") == "true", reason="Need to execute in a CUDA environment.", ) + + def test_pai_pdf_reader(): + from pai_rag.core.rag_config_manager import RagConfigManager + from pai_rag.core.rag_module import resolve + from pai_rag.integrations.readers.pai.pai_data_reader import PaiDataReader + from pai_rag.integrations.readers.pai_pdf_reader import PaiPDFReader + from pai_rag.utils.download_models import ModelScopeDownloader + config_file = os.path.join(BASE_DIR, "src/pai_rag/config/settings.toml") config = RagConfigManager.from_file(config_file).get_value() directory_reader = resolve( @@ -33,6 +34,8 @@ def test_pai_pdf_reader(): def test_is_horizontal_table(): + from pai_rag.utils.markdown_utils import is_horizontal_table + # example data horizontal_table_1 = [ ["Name", "Age", "City"], diff --git a/tests/integrations/test_markdown_mode_parser.py b/tests/integrations/test_markdown_mode_parser.py index 193789fd..8b50c64a 100644 --- a/tests/integrations/test_markdown_mode_parser.py +++ b/tests/integrations/test_markdown_mode_parser.py @@ -1,11 +1,6 @@ -from pai_rag.core.rag_module import resolve -from pai_rag.integrations.nodeparsers.base import MarkdownNodeParser import os import pytest from pathlib import Path -from pai_rag.core.rag_config_manager import RagConfigManager -from pai_rag.integrations.readers.pai.pai_data_reader import PaiDataReader -from pai_rag.utils.download_models import ModelScopeDownloader BASE_DIR = Path(__file__).parent.parent.parent @@ -15,6 +10,12 @@ reason="Need to execute in a CUDA environment.", ) def test_markdown_parser(): + from pai_rag.core.rag_module import resolve + from pai_rag.integrations.nodeparsers.base import MarkdownNodeParser + from pai_rag.core.rag_config_manager import RagConfigManager + from pai_rag.integrations.readers.pai.pai_data_reader import PaiDataReader + from pai_rag.utils.download_models import ModelScopeDownloader + config_file = os.path.join(BASE_DIR, "src/pai_rag/config/settings.toml") config = RagConfigManager.from_file(config_file).get_value() directory_reader = resolve( @@ -29,4 +30,4 @@ def test_markdown_parser(): for doc_node in documents: splitted_nodes.extend(md_node_parser.get_nodes_from_documents([doc_node])) - assert len(splitted_nodes) == 6 + assert len(splitted_nodes) == 8 diff --git a/tests/utils/test_post_process_multi_level_headings.py b/tests/utils/test_post_process_multi_level_headings.py index ccdccd80..de0d7bc2 100644 --- a/tests/utils/test_post_process_multi_level_headings.py +++ b/tests/utils/test_post_process_multi_level_headings.py @@ -1,5 +1,7 @@ import json -from pai_rag.integrations.readers.pai_pdf_reader import PaiPDFReader +import pytest +import os + json_str = r"""{ "pdf_info": [ @@ -45,7 +47,13 @@ md_str = """# $\leftarrow$ """ +@pytest.mark.skipif( + os.getenv("SKIP_GPU_TESTS", "false") == "true", + reason="Need to execute in a CUDA environment.", +) def test_post_process_multi_level_headings(): + from pai_rag.integrations.readers.pai_pdf_reader import PaiPDFReader + pdf_process = PaiPDFReader() json_content = json.loads(json_str) md_content_escape = pdf_process.post_process_multi_level_headings(