From 087f1ea8351188ea9dc80a62f93ec66c0f8d79d8 Mon Sep 17 00:00:00 2001 From: <> Date: Thu, 21 Dec 2023 12:57:11 +0000 Subject: [PATCH] Deployed f85babf with MkDocs version: 1.5.3 --- faq/index.html | 30 ++++++++++++++++++++++++++++++ index.html | 2 +- search/search_index.json | 2 +- sitemap.xml.gz | Bin 127 -> 127 bytes 4 files changed, 32 insertions(+), 2 deletions(-) diff --git a/faq/index.html b/faq/index.html index d50d9ce..38c35a1 100644 --- a/faq/index.html +++ b/faq/index.html @@ -56,6 +56,8 @@
  • Why am I getting this 'docker: Permission denied' error?
    • +
  • My server doesn't have that much memory! How do I change the resource requirements? +
    • @@ -174,6 +176,34 @@

    Why am I getting t

    If running on an HPC system, talk to your system administrator or consider running ARETE with Singularity.

    +

    My server doesn't have that much memory! How do I change the resource requirements?

    +

    Just write a file called nextflow.config in your working directory and add the following to it:

    +
    process {
+    withLabel:process_low {
+        cpus   = 6
+        memory = 8.GB
+        time   = 4.h
+    }
+    withLabel:process_medium {
+        cpus   = 12
+        memory = 36.GB
+        time   = 8.h
+    }
+    withLabel:process_high {
+        cpus   = 16
+        memory = 72.GB
+        time   = 20.h
+    }
+    withLabel:process_high_memory {
+        memory = 200.GB
+    }
+    withName: MOB_RECON {
+        cpus = 2
+    }
+}
+
    +

    Feel free to change the values above as you wish and then add -c nextflow.config to your nextflow run beiko-lab/ARETE command.

    +

    You can point to general process labels, like process_low, or you can point directly to process names, like MOB_RECON. Learn more at our usage documentation or the official nextflow documentation.