data for re-plotting the expression correlation as in the plot output

[ruthchia]

Hi,

Is there a way to extract the expression correlation data that was used in the plot output?
I want to replot it to restrict it to a handful of genes in the region because some regions have too many genes, and so the gene names are all squished and not legible.

Can you provide some guidance on how to extract that data?
or perhaps there is an option/flag I can use to define what genes I want to plot using your script?

thanks,
Ruth