PennCfgExample.toml

[experiment]
experimentName = "rtAttenPenn"
experimentId = 2
model = "rtAtten"

[session]
rtData = true
date = "2/19/2019" # or "today" or "2018-03-01" or "03/01/2018" etc.
sessionId = "now" #"20181210T123000" comment this line out to put in todays data/time
subjectName = "0219191_rtAttenPenn"
subjectNum = 1
subjectDay = 1
dataDir = "/Users/amennen/github/rtAttenPenn_display/data/" # data for display 
imgDir =  "/Users/amennen/tmp/dicomDir/" # data for DICOMs
buildImgPath = true
legacyRun1Phase2Mode = true
serverDataDir = "data/server"
findNewestPatterns = true
watchFilePattern = "*.dcm"
dicomNamePattern = "001_0000{}_000{}.dcm"
minExpectedDicomSize = 300000
retrieveServerFiles = false
skipConfirmForReprocess = true
sliceDim = 64
cutoff = 200
FWHM = 5
registrationDryRun = false
fParam = 0.6
roi_name = "wholebrain_mask"
# wherever you put this nothing will show below: advancedOptionDemarcation = 0

## DISPLAY PARAMETERS ##
useButtonBox = 1
debugMode = 0
usePyOutput = 1
## DISPLAY PARAMETERS ##

## EXP DESIGN ##
#NEUTRAL = 1
#SAD = 2
#HAPPY = 3
typeNum = 2
## EXP DESIGN ##

Runs = [7]
ScanNums = [23]
Runs1 = [1,2,3,4,5,6,7]
ScanNums1=[13,15,17,19,21,23,25]
Runs2 = [1,2,3,4,5,6,7,8,9]
ScanNums2=[8,10,12,14,16,18,20,22,24]
Runs3 = [1,2,3,4,5,6,7,8]
ScanNums3=[8,10,12,14,16,18,20,22]
#Runs = [1,2, 3, 4, 5 ,6, 7 ]
#ScanNums = [11,13, 15, 17,19,21,23]
#ScanNums = [10, 12 ,14 ,16 ,18 , 20, 22, 24]
## !Below here! --> Fields for replaying already collected data ##
replayMatFileMode = false  # will use validationData[] mat files to replay
validate = false
patternsDesignFiles = ["patternsdesign_1_20180105T000000.mat", "patternsdesign_2_20180105T000000.mat", "patternsdesign_3_20180105T000000.mat"]
validationData = ["patternsdata_1_20180105T_1048.mat", "patternsdata_2_20180105T_1049.mat", "patternsdata_3_20180105T_1049.mat"]
validationModels = ["trainedModel_1_20180105T_1048.mat", "trainedModel_2_20180105T_1049.mat", "trainedModel_3_20180105T_1049.mat"]