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GraphStringDb tool help

GraphStringDb (2021_06-89-gbbd16264)

Creates simple representation of String-DB interaction graph.

Mandatory parameters:
  -string <file>     String-DB file with protein interactions (https://stringdb-static.org/download/protein.links.v11.5/9606.protein.links.v11.5.txt.gz).
  -alias <file>      Input TSV file with aliases for String protein IDs (https://stringdb-static.org/download/protein.aliases.v11.5/9606.protein.aliases.v11.5.txt.gz).
  -out <file>        Output TSV file with edges.

Optional parameters:
  -min_score <float> Minimum confidence score cutoff for String-DB interaction (0-1).
                     Default value: '0.4'

Special parameters:
  --help             Shows this help and exits.
  --version          Prints version and exits.
  --changelog        Prints changeloge and exits.
  --tdx              Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.

GraphStringDb changelog

GraphStringDb 2021_06-89-gbbd16264

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