TranscriptsToBed (2023_03-63-gec44de43)
Converts a text file with transcript names to a BED file.
Mandatory parameters:
-mode <enum> Mode: gene = start/end of the transcript, exon = start/end of all exons of the transcript.
Valid: 'gene,exon'
Optional parameters:
-in <file> Input TXT file with one transcript name per line. If unset, reads from STDIN.
Default value: ''
-out <file> Output BED file. If unset, writes to STDOUT.
Default value: ''
-test Uses the test database instead of on the production database.
Default value: 'false'
Special parameters:
--help Shows this help and exits.
--version Prints version and exits.
--changelog Prints changeloge and exits.
--tdx Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
TranscriptsToBed 2023_03-63-gec44de43
2023-05-25 First version.