diff --git a/.github/dependabot.yml b/.github/dependabot.yml index c02a48f9..e9a58ee8 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -39,3 +39,6 @@ updates: - "pandas" - "scipy" - "sqlalchemy" + ignore: + # ignore cytominer-database as it is deprecated + - dependency-name: "cytominer-database" diff --git a/poetry.lock b/poetry.lock index c8171ae4..723f771b 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. [[package]] name = "agate" @@ -388,6 +388,31 @@ files = [ [package.extras] dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] +[[package]] +name = "backports-tempfile" +version = "1.0" +description = "Backport of new features in Python's tempfile module" +optional = true +python-versions = "*" +files = [ + {file = "backports.tempfile-1.0-py2.py3-none-any.whl", hash = "sha256:05aa50940946f05759696156a8c39be118169a0e0f94a49d0bb106503891ff54"}, + {file = "backports.tempfile-1.0.tar.gz", hash = "sha256:1c648c452e8770d759bdc5a5e2431209be70d25484e1be24876cf2168722c762"}, +] + +[package.dependencies] +"backports.weakref" = "*" + +[[package]] +name = "backports-weakref" +version = "1.0.post1" +description = "Backport of new features in Python's weakref module" +optional = true +python-versions = "*" +files = [ + {file = "backports.weakref-1.0.post1-py2.py3-none-any.whl", hash = "sha256:81bc9b51c0abc58edc76aefbbc68c62a787918ffe943a37947e162c3f8e19e82"}, + {file = "backports.weakref-1.0.post1.tar.gz", hash = "sha256:bc4170a29915f8b22c9e7c4939701859650f2eb84184aee80da329ac0b9825c2"}, +] + [[package]] name = "beautifulsoup4" version = "4.12.3" @@ -837,21 +862,21 @@ zstandard = ["zstandard"] [[package]] name = "cytominer-database" -version = "0.3.5" +version = "0.3.4" description = "" optional = true python-versions = "*" files = [ - {file = "cytominer_database-0.3.5-py2.py3-none-any.whl", hash = "sha256:b80b7c7b08b8c555c3057ded834f2204dc1f7667eb9b410f4a1f996b62f3867f"}, - {file = "cytominer_database-0.3.5.tar.gz", hash = "sha256:9dfd1e5c49d085656ce32e716a6d8e95b2b3418433e75aefae4662f1ca7da6ec"}, + {file = "cytominer_database-0.3.4-py2.py3-none-any.whl", hash = "sha256:e35512eb1ffd681e264892b2804a4d91ac441c510c97c1dd2cb8eb903c5567e6"}, + {file = "cytominer_database-0.3.4.tar.gz", hash = "sha256:9e16bfe3f635e65d8725232f213a046fedda46f78b5b330fb2e33563eebff685"}, ] [package.dependencies] +"backports.tempfile" = ">=1.0rc1" click = ">=6.7" configparser = ">=3.5.0" -csvkit = ">=1.0.2,<2" +csvkit = ">=1.0.2" pandas = ">=0.20.3" -pyarrow = "*" [[package]] name = "dbfread" @@ -4433,4 +4458,4 @@ collate = ["cytominer-database"] [metadata] lock-version = "2.0" python-versions = ">=3.9,<3.13" -content-hash = "11c0c9161b033bbb25303327e706ba16fce769075d38c77c5f6b32b7bab5bed8" +content-hash = "e593285c0b1001dc4adf7463e76ad7295c07508b2a1c5478d5c6c42e87e25d23" diff --git a/pyproject.toml b/pyproject.toml index 25fa086a..e1140db2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -61,7 +61,7 @@ boto3 = { version = ">=1.26.79", optional = true } fire = { version = ">=0.5.0", optional = true } # Extra dependencies for collate -cytominer-database = { version = "0.3.5", optional = true } +cytominer-database = { version = "0.3.4", optional = true } [tool.poetry.extras] cell-locations = [ "fsspec", "s3fs", "boto3", "fire" ]