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environment.yml
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name: /home/wangshuai/softwares/SpecHLA/spechla_env
channels:
- conda-forge
- bioconda
- defaults
- anaconda
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- amply=0.1.5=pyhd8ed1ab_0
- arpack=3.8.0=nompi_h0baa96a_101
- bamutil=1.0.14=h8b12597_5
- bedtools=2.26.0=0
- biopython=1.79=py38h497a2fe_1
- blast=2.12.0=hf3cf87c_4
- blat=35=2
- bowtie2=2.4.5=py38hfbc8389_2
- bwa=0.7.17=h7132678_9
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.12.7=ha878542_0
- cmake
- coin-or-cbc=2.10.8=h3786ebc_0
- coin-or-cgl=0.60.6=he2f9439_0
- coin-or-clp=1.17.6=h256e9bb_3
- coin-or-osi=0.108.7=h3b589db_0
- coin-or-utils=2.11.6=h573740c_0
- coincbc=2.10.8=0_metapackage
- curl=7.83.1=h7bff187_0
- docutils=0.18.1=py38h578d9bd_1
- edlib=1.3.9=py38h43d8883_2
- entrez-direct=16.2=he881be0_1
- freebayes=1.3.2=py38h40864fe_2
- gettext=0.21.1=h27087fc_0
- htslib=1.15.1=h9753748_0
- k8=0.2.5=hd03093a_2
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h3790be6_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- libblas=3.9.0=14_linux64_openblas
- libcblas=3.9.0=14_linux64_openblas
- libcurl=7.83.1=h7bff187_0
- libdeflate=1.10=h7f98852_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=12.1.0=h8d9b700_16
- libgfortran-ng=12.1.0=h69a702a_16
- libgfortran5=12.1.0=hdcd56e2_16
- libgomp=12.1.0=h8d9b700_16
- libidn2=2.3.4=h166bdaf_0
- liblapack=3.9.0=14_linux64_openblas
- liblapacke=3.9.0=14_linux64_openblas
- libnghttp2=1.47.0=h727a467_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.20=pthreads_h78a6416_0
- libpng=1.6.37=h21135ba_2
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-ng=12.1.0=ha89aaad_16
- libunistring=0.9.10=h7f98852_0
- libzlib=1.2.11=h166bdaf_1014
- longshot=0.4.5=hc4ca7c3_0
- lz4-c=1.9.3=h9c3ff4c_1
- minimap2=2.17=h5bf99c6_4
- ncurses=6.3=h27087fc_1
- numpy=1.22.3=py38h99721a1_2
- openssl=1.1.1t=h0b41bf4_0
- pandas=1.2.5=py38h295c915_0
- parallel=20230122=ha770c72_0
- pbmm2=1.9.0=h9ee0642_0
- pbsv=2.6.2=h9ee0642_0
- pcre=8.45=h9c3ff4c_0
- perl=5.32.1=2_h7f98852_perl5
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-carp=1.50=pl5321hd8ed1ab_0
- perl-common-sense=3.75=pl5321hd8ed1ab_0
- perl-compress-raw-bzip2=2.201=pl5321h166bdaf_0
- perl-compress-raw-zlib=2.202=pl5321h166bdaf_0
- perl-encode=3.19=pl5321h166bdaf_0
- perl-exporter=5.74=pl5321hd8ed1ab_0
- perl-exporter-tiny=1.002002=pl5321hd8ed1ab_0
- perl-extutils-makemaker=7.66=pl5321hd8ed1ab_0
- perl-io-compress=2.201=pl5321h87f3376_0
- perl-io-zlib=1.14=pl5321hdfd78af_0
- perl-json=4.10=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h9f5acd7_5
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321hec16e2b_1
- perl-parent=0.241=pl5321hd8ed1ab_0
- perl-pathtools=3.75=pl5321h166bdaf_0
- perl-scalar-list-utils=1.63=pl5321h166bdaf_0
- perl-storable=3.15=pl5321h166bdaf_0
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- pip=22.0.4=pyhd8ed1ab_0
- pulp=2.6.0=py38h578d9bd_1
- pyparsing=3.0.9=pyhd8ed1ab_0
- pysam=0.19.0=py38h8bf8b8d_0
- python=3.8.12=ha38a3c6_3_cpython
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python_abi=3.8=2_cp38
- pytz=2022.1=py38h06a4308_0
- pyvcf=0.6.8=py38h32f6830_1002
- readline=8.1=h46c0cb4_0
- samtools=1.3.1=h9071d68_10
- scipy=1.8.0=py38h56a6a73_1
- setuptools=62.3.2=py38h578d9bd_0
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.38.5=h4ff8645_0
- tbb=2020.2=h4bd325d_4
- tk=8.6.12=h27826a3_0
- wget=1.20.3=ha56f1ee_1
- wheel=0.37.1=pyhd8ed1ab_0
- xz=5.2.5=h516909a_1
- zlib=1.2.11=h166bdaf_1014
- zstd=1.5.2=h8a70e8d_1
prefix: /home/wangshuai/softwares/SpecHLA/spechla_env