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sos-installation.md

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Install SoS workflow and notebook in MacOS

  1. Make sure you have python 3.6 or more installed

  2. Run the following commmands for SoS-workflow (worked for me)

    pip3.7 install sos
pip3.7 install sos-pbs

  3. Run the following commands for SoS-notebook

    pip3.7 install sos-notebook
pip3.7 install sos-papermill
pip3.7 install sos-r

  4. In MacOs the sos and sos-runner will be installed in a folder called

    /Library/Frameworks/Python.framework/Versions/3.7/bin/sos

  5. You will have to create a symbolic link where the miniconda3 is installed

   cd /User/.../miniconda3/condabin/
   ln -s /Library/Frameworks/Python.framework/Versions/3.7/bin/sos sos
   ln -s /Library/Frameworks/Python.framework/Versions/3.7/bin/sos-runner sos-runner
  1. Now you will be able to run the statgen-setup script to acces de VM