Quiet Quagga

Fix #141 (issue with changes in Seurat object interface)

Peaceful Pangolin

Fix xlsx dependency and rebuild doc in html format.

Optimistic Ox

Remove dependency to xlsx R package (which has a rJava dependency). Replaced by WriteXLS.

Notable Needlefish

See changelog file.

Memorable Manatee

v1.4.6

Fix version numbering...

Lonely leopard

1.4.4

Try to fix #134

Kind Koala

Fix bug #137.

Jinxed Jackdaw

• Update of the documentation
• Improve get_genes function : gene names are ordered by gene clusters
• Fix viz_enrich function : viz_enrich function is now working when using a specific ontology db as ontology parameter in enrich_go function

Immortal Impala

• Add a clustering method using hierchical clustering and DynamicTreeCut R package
• Add a cell_clusters slot in the ClusterSet object
• Create a new documentation
• Modification of the av_dot_prod_min filter : use the max of the median values of the dot product
• Add get_genes and get_cells functions
• Improve the computational speed of DBFMCL function
• Replace the name of the slot "cluster" by "gene_patterns"
• Implementation of new test (testthat)

Holy Hoopoe

• Update the package used for enrichment analysis to use ClusterProfiler
• Update visualization of enrichment analysis results : add dotplot and barplot provided by ClusterProfiler
• Add more parameters to control the density plot of distances
• Fix issues from Github