diff --git a/ES/Dockerfile b/ES/Dockerfile new file mode 100644 index 0000000..e47063c --- /dev/null +++ b/ES/Dockerfile @@ -0,0 +1,76 @@ +# ================================================================= +# +# Authors: Just van den Broecke > +# Jorge Samuel Mendes de Jesus +# Tom Kralidis +# +# Copyright (c) 2019 Just van den Broecke +# Copyright (c) 2019 Jorge Samuel Mendes de Jesus +# Copyright (c) 2020 Tom Kralidis +# +# Permission is hereby granted, free of charge, to any person +# obtaining a copy of this software and associated documentation +# files (the "Software"), to deal in the Software without +# restriction, including without limitation the rights to use, +# copy, modify, merge, publish, distribute, sublicense, and/or sell +# copies of the Software, and to permit persons to whom the +# Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be +# included in all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, +# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES +# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, +# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING +# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR +# OTHER DEALINGS IN THE SOFTWARE. +# +# ================================================================= + +FROM docker.elastic.co/elasticsearch/elasticsearch:7.5.1 + +LABEL maintainer="jorge.dejesus@geocat.net justb4@gmail.com" +ARG DATA_FOLDER=/usr/share/elasticsearch/data + +USER root + +COPY docker-entrypoint.sh /docker-entrypoint.sh +COPY add_data.sh /add_data.sh + +#COPY ./data/* ${DATA_FOLDER}/ + +RUN yum install -y wget + +RUN wget https://raw.githubusercontent.com/vishnubob/wait-for-it/master/wait-for-it.sh -O bin/wait-for-it.sh +RUN chmod +x bin/wait-for-it.sh +# RUN wget https://raw.githubusercontent.com/geopython/pygeoapi/master/tests/data/ne_110m_populated_places_simple.geojson -O ${DATA_FOLDER}/ne_110m_populated_places_simple.geojson +RUN wget https://raw.githubusercontent.com/geopython/pygeoapi/master/tests/load_es_data.py -O /load_es_data.py + +RUN echo "xpack.security.enabled: false" >> config/elasticsearch.yml +RUN echo "http.host: 0.0.0.0" >> config/elasticsearch.yml +RUN echo "discovery.type: single-node" >> config/elasticsearch.yml + +RUN yum --enablerepo=extras -y install epel-release \ + && yum install -y python3 python3-pip python3-setuptools python-typing \ + && pip3 install --upgrade pip elasticsearch==7.17.1 elasticsearch-dsl \ + && yum clean packages + +USER elasticsearch + +CMD ["/usr/share/elasticsearch/bin/elasticsearch"] + +ENTRYPOINT ["/docker-entrypoint.sh"] + +# we need to run this on host +#sudo sysctl -w vm.max_map_count=262144 +#check indices +#http://localhost:9200/_cat/indices?v +#check spatial data +#http://localhost:9200/ne_110m_populated_places_simple/ +#This docker compose was inspired on: +#https://discuss.elastic.co/t/best-practice-for-creating-an-index-when-an-es-docker-container-starts/126651 +#docker run -p 9200:9200 -p 9300:9300 -e "discovery.type=single-node" es:latest diff --git a/ES/add_data.sh b/ES/add_data.sh new file mode 100755 index 0000000..6591091 --- /dev/null +++ b/ES/add_data.sh @@ -0,0 +1,83 @@ +#!/bin/sh +# ================================================================= +# +# Authors: Just van den Broecke > +# Jorge Samuel Mendes de Jesus +# +# Copyright (c) 2019 Just van den Broecke +# Copyright (c) 2019 Jorge Samuel Mendes de Jesus +# +# Permission is hereby granted, free of charge, to any person +# obtaining a copy of this software and associated documentation +# files (the "Software"), to deal in the Software without +# restriction, including without limitation the rights to use, +# copy, modify, merge, publish, distribute, sublicense, and/or sell +# copies of the Software, and to permit persons to whom the +# Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be +# included in all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, +# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES +# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, +# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING +# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR +# OTHER DEALINGS IN THE SOFTWARE. +# +# ================================================================= + + +echo "Starting script to add geojson" +# move to the directory of this setup script +cd "$(dirname "$0")" + +# for some reason even when port 9200 is open Elasticsearch is unable to be accessed as authentication fails +# a few seconds later it works +# incresing to 50s for wait in a slow system /_cluster/health?wait_for_status=yellow&timeout=50s +until $(curl -sSf -XGET --insecure 'http://localhost:9200/_cluster/health?wait_for_status=yellow' > /dev/null); do + printf 'No status yellow from ES, trying again in 10 seconds \n' + sleep 10 +done + +dataset="${DATASET:-obs}" + +## ADDING DATA ************************************************* + +echo "Elasticsearch seems to be working - Adding $dataset to ES" + +python3 /load_es_data.py /in/"$dataset".geojson fid + +# Waiting for geopackage_pusher container to create the file +while ! test -f "/in/activity_level_ldn.geojson"; do + sleep 10 + echo "Still waiting" +done +python3 /load_es_data.py /in/activity_level_ldn.geojson GSS_CODE + +# Waiting for geopackage_pusher container to create the file +while ! test -f "/in/cardivasular_disease_ldn.geojson"; do + sleep 10 + echo "Still waiting" +done +python3 /load_es_data.py /in/cardivasular_disease_ldn.geojson GSS_CODE + +# Waiting for geopackage_pusher container to create the file +while ! test -f "/in/tweet_count_sample.geojson"; do + sleep 10 + echo "Still waiting" +done +python3 /load_es_data.py /in/tweet_count_sample.geojson id + +echo "Pushing EC metadata" +python3 /load_es_data.py /in/metadata/ec_catalog.geojson id + +echo "Seems that data was loaded" + +## ************************************************************* + +# create 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"33.096849164044954", "UTCI": "29.8", "fid": "8f023cc5c5014bd9ba8e928afc45b6" }, "geometry": { "type": "Point", "coordinates": [ -9.13519, 38.70985 ] } } +] +} diff --git a/ES/docker-entrypoint.sh b/ES/docker-entrypoint.sh new file mode 100755 index 0000000..8f586a6 --- /dev/null +++ b/ES/docker-entrypoint.sh @@ -0,0 +1,36 @@ +#!/bin/sh +# ================================================================= +# +# Authors: Just van den Broecke > +# Jorge Samuel Mendes de Jesus +# +# Copyright (c) 2019 Just van den Broecke +# Copyright (c) 2019 Jorge Samuel Mendes de Jesus +# +# Permission is hereby granted, free of charge, to any person +# obtaining a copy of this software and associated documentation +# files (the "Software"), to deal in the Software without +# restriction, including without limitation the rights to use, +# copy, modify, merge, publish, distribute, sublicense, and/or sell +# copies of the Software, and to permit persons to whom the +# Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be +# included in all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, +# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES +# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, +# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING +# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR +# OTHER DEALINGS IN THE SOFTWARE. +# +# ================================================================= + +# wait for Elasticsearch to start, then run the setup script to +# create and configure the index. +exec /usr/share/elasticsearch/bin/wait-for-it.sh localhost:9200 -- /add_data.sh & +exec $@ diff --git a/README.md b/README.md index 80ba181..380c20d 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,36 @@ -# openapi-sdi -A Spatial Data Infrastructure based on OGC Open API specifications +# pygeoapi with ElasticSearch (ES) + +These folders contain a Docker Compose configuration necessary to setup a minimal +`pygeoapi` server that uses a local ES backend service. + +This config is only for local development and testing. + +## ElasticSearch + +- official ElasticSearch: **5.6.8** on **CentosOS 7** +- ports **9300** and **9200** + +ES requires the host system to have its virtual memory +parameter (**max_map_count**) [here](https://www.elastic.co/guide/en/elasticsearch/reference/current/vm-max-map-count.html) +set as follows: + +``` +sudo sysctl -w vm.max_map_count=262144 +``` + +If the docker composition fails with the following error: +``` +docker_elastic_search_1 exited with code 78 +``` + +it is very likely that you forgot to setup the `sysctl`. + +## Building and Running + +To build and run the [Docker compose file](docker-compose.yml) in localhost: + +``` +sudo sysctl -w vm.max_map_count=262144 +docker-compose build +docker-compose up +``` diff --git a/docker-compose-local.yml b/docker-compose-local.yml new file mode 100644 index 0000000..0236640 --- /dev/null +++ b/docker-compose-local.yml @@ -0,0 +1,124 @@ +# ================================================================= +# +# Authors: Just van den Broecke > +# Jorge Samuel Mendes de Jesus +# +# Copyright (c) 2019 Just van den Broecke +# Copyright (c) 2019 Jorge Samuel Mendes de Jesus +# +# Permission is hereby granted, free of charge, to any person +# obtaining a copy of this software and associated documentation +# files (the "Software"), to deal in the Software without +# restriction, including without limitation the rights to use, +# copy, modify, merge, publish, distribute, sublicense, and/or sell +# copies of the Software, and to permit persons to whom the +# Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be +# included in all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, +# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES +# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, +# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING +# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR +# OTHER DEALINGS IN THE SOFTWARE. +# +# ================================================================= + +version: '3.3' + +services: + pygeoapi: + image: geopython/pygeoapi:latest + container_name: pygeoapi_es + entrypoint: + - /es-entrypoint.sh + ports: + - 80:80 + volumes: + - ./pygeoapi/docker.config.local.yml:/pygeoapi/local.config-orig.yml + - ./pygeoapi/es-entrypoint.sh:/es-entrypoint.sh + - ./pygeoapi/wait-for-elasticsearch.sh:/wait-for-elasticsearch.sh + #- /home/joana/git/pygeoapi/tests/data/tiles/obs:/pygeoapi/tests/data/tiles/obs + environment: + - "DATASET=masked" + networks: + - proxynet + - default + links: + - elastic_search + depends_on: + - elastic_search + + elastic_search: + build: ./ES + + container_name: elastic + + environment: + - "discovery.type=single-node" + - bootstrap.memory_lock=true + - "ES_JAVA_OPTS=-Xms512m -Xmx512m" + - "DATASET=masked" + ulimits: + memlock: + soft: -1 + hard: -1 + + ports: + - 9300:9300 + - 9200:9200 + volumes: + - elastic_search_data:/usr/share/elasticsearch/data + - ./ES/data:/in + + kib01: + image: docker.elastic.co/kibana/kibana:7.5.1 + container_name: kibana + ports: + - 5601:5601 + environment: + ELASTICSEARCH_URL: http://elastic:9200 + ELASTICSEARCH_HOSTS: '["http://elastic:9200"]' + SERVER_BASEPATH: /dashboard + + metadata_logstash: + build: ./logstash + container_name: metadata_logstash + environment: + ELASTICSEARCH_URL: http://elastic:9200 + ELASTICSEARCH_HOSTS: '["http://elastic:9200"]' + XPACK_MONITORING_ENABLED: 'false' + DATASET: 'masked' + links: + - elastic_search + depends_on: + - elastic_search + + geopackage_pusher: + build: ./gdal + container_name: geopackage_pusher + volumes: + - ./gdal/data:/in + - ./ES/data:/out + links: + - elastic_search + depends_on: + - elastic_search + command: bash -c "/docker-entrypoint.sh" + +volumes: + elastic_search_data: {} + +networks: + default: + driver: bridge + proxynet: + name: minioNet # Minio's network + +#NOTE: Host requires changes in configuration to run ES +#sudo sysctl -w vm.max_map_count=262144 diff --git a/docker-compose.yml b/docker-compose.yml new file mode 100644 index 0000000..e997f5a --- /dev/null +++ b/docker-compose.yml @@ -0,0 +1,151 @@ +# ================================================================= +# +# Authors: Just van den Broecke > +# Jorge Samuel Mendes de Jesus +# +# Copyright (c) 2019 Just van den Broecke +# Copyright (c) 2019 Jorge Samuel Mendes de Jesus +# +# Permission is hereby granted, free of charge, to any person +# obtaining a copy of this software and associated documentation +# files (the "Software"), to deal in the Software without +# restriction, including without limitation the rights to use, +# copy, modify, merge, publish, distribute, sublicense, and/or sell +# copies of the Software, and to permit persons to whom the +# Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be +# included in all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, +# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES +# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, +# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING +# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR +# OTHER DEALINGS IN THE SOFTWARE. +# +# ================================================================= + +version: '3.3' + +services: + pygeoapi: + image: geopython/pygeoapi:latest + + container_name: pygeoapi_es + entrypoint: + - /es-entrypoint.sh + + environment: + - "DATASET=masked" + + networks: + - proxynet + - default + + volumes: + - ./pygeoapi/docker.config.yml:/pygeoapi/local.config-orig.yml + - ./pygeoapi/es-entrypoint.sh:/es-entrypoint.sh + - ./pygeoapi/wait-for-elasticsearch.sh:/wait-for-elasticsearch.sh + + links: + - elastic_search + + depends_on: + - elastic_search + + elastic_search: + build: ./ES + + container_name: elastic + + environment: + - "discovery.type=single-node" + - bootstrap.memory_lock=true + - "ES_JAVA_OPTS=-Xms512m -Xmx512m" + - "DATASET=masked" + - "logger.level=WARN" + ulimits: + memlock: + soft: -1 + hard: -1 + + ports: + - 9300:9300 + - 9200:9200 + volumes: + - elastic_search_data:/usr/share/elasticsearch/data + - ./ES/data:/in + + kib01: + image: docker.elastic.co/kibana/kibana:7.5.1 + container_name: kibana + ports: + - 5601:5601 + environment: + ELASTICSEARCH_URL: http://elastic:9200 + ELASTICSEARCH_HOSTS: '["http://elastic:9200"]' + SERVER_BASEPATH: /dashboard + #SERVER_HOST: emotional.byteroad.net + + nginx: + image: nginx:stable-alpine + container_name: nginx + ports: + - "80:80" + - "443:443" + volumes: + - ./nginx/.htpasswd:/etc/nginx/.htpasswd + - ./nginx:/etc/nginx/conf.d + - /etc/letsencrypt/:/etc/letsencrypt/ + - /etc/ssl/certs/dhparam.pem:/etc/ssl/certs/dhparam.pem + - ./nginx/options-ssl-nginx.conf:/etc/options-ssl-nginx.conf + command: "/bin/sh -c 'while :; do sleep 6h & wait $${!}; nginx -s reload; done & nginx -g \"daemon off;\"'" + networks: + - proxynet + - default + restart: unless-stopped + depends_on: + - pygeoapi + + metadata_logstash: + build: ./logstash + container_name: metadata_logstash + environment: + ELASTICSEARCH_URL: http://elastic:9200 + ELASTICSEARCH_HOSTS: '["http://elastic:9200"]' + XPACK_MONITORING_ENABLED: 'false' + DATASET: 'masked' + LOG_LEVEL: 'error' + links: + - elastic_search + depends_on: + - elastic_search + + geopackage_pusher: + build: ./gdal + container_name: geopackage_pusher + volumes: + - ./gdal/data:/in + - ./ES/data:/out + links: + - elastic_search + depends_on: + - elastic_search + command: bash -c "/docker-entrypoint.sh" + + +volumes: + elastic_search_data: {} + +networks: + default: + driver: bridge + proxynet: + name: minioNet # Minio's network + +#NOTE: Host requires changes in configuration to run ES +#sudo sysctl -w vm.max_map_count=262144 diff --git a/gdal/Dockerfile b/gdal/Dockerfile new file mode 100644 index 0000000..9cb126e --- /dev/null +++ b/gdal/Dockerfile @@ -0,0 +1,5 @@ +FROM osgeo/gdal:ubuntu-small-latest + +COPY docker-entrypoint.sh /docker-entrypoint.sh +RUN chmod 777 /docker-entrypoint.sh +RUN chmod +x /docker-entrypoint.sh diff --git a/gdal/data/activity_level_ldn.gpkg b/gdal/data/activity_level_ldn.gpkg new file mode 100755 index 0000000..38cb2de Binary files /dev/null and b/gdal/data/activity_level_ldn.gpkg differ diff --git a/gdal/data/cardivasular_disease_ldn.gpkg b/gdal/data/cardivasular_disease_ldn.gpkg new file mode 100755 index 0000000..eb9bdd6 Binary files /dev/null and b/gdal/data/cardivasular_disease_ldn.gpkg differ diff --git a/gdal/data/tweet_count_sample.gpkg b/gdal/data/tweet_count_sample.gpkg new file mode 100755 index 0000000..e4dadb7 Binary files /dev/null and b/gdal/data/tweet_count_sample.gpkg differ diff --git a/gdal/docker-entrypoint.sh b/gdal/docker-entrypoint.sh new file mode 100755 index 0000000..756d728 --- /dev/null +++ b/gdal/docker-entrypoint.sh @@ -0,0 +1,10 @@ +>&2 echo "Pushing geopackage indexes" +rm -f /out/activity_level_ldn.geojson +ogr2ogr -geomfield geom -nlt MULTIPOLYGON -s_srs EPSG:27700 -t_srs EPSG:4326 -makevalid -overwrite -f GeoJSON /out/activity_level_ldn.geojson /in/activity_level_ldn.gpkg +rm -f /out/cardivasular_disease_ldn.geojson +ogr2ogr -geomfield geom -nlt MULTIPOLYGON -s_srs EPSG:27700 -t_srs EPSG:4326 -makevalid -overwrite -f GeoJSON /out/cardivasular_disease_ldn.geojson /in/cardivasular_disease_ldn.gpkg +rm -f /out/tweet_count_sample.geojson +ogr2ogr -geomfield geom -nlt MULTIPOLYGON -s_srs EPSG:27700 -t_srs EPSG:4326 -makevalid -overwrite -f GeoJSON /out/tweet_count_sample.geojson /in/tweet_count_sample.gpkg +chmod 744 /out/*.geojson +>&2 echo "Geopackage indexes are loaded" +exec $@ \ No newline at end of file diff --git a/logstash/Dockerfile b/logstash/Dockerfile new file mode 100644 index 0000000..56fcc67 --- /dev/null +++ b/logstash/Dockerfile @@ -0,0 +1,5 @@ +FROM docker.elastic.co/logstash/logstash:7.5.1 + +LABEL maintainer="ant@byteroad.net" + +COPY masked_metadata.conf /usr/share/logstash/pipeline/masked_metadata.conf diff --git a/logstash/masked_metadata.conf b/logstash/masked_metadata.conf new file mode 100755 index 0000000..0241a3d --- /dev/null +++ b/logstash/masked_metadata.conf @@ -0,0 +1,85 @@ +# Connection to Elasticsearch +input { + elasticsearch { + hosts => ["elastic:9200"] + #user => "elastic" + #password => "elastic12pr2" + index => "masked" + #ilm_enabled => false + #manage_template => false + #document_id => "%{_id}" + #doc_as_upsert => true + } +} +# Data transformation +filter { + kv { + id => "add_metadata" + add_field => [ "recordId", "%{[properties][fid]}", + "recordCreated", "%{@timestamp}", + "recordUpdated", "%{@timestamp}", + "[properties][created]", "%{@timestamp}", + "[properties][updated]", "%{@timestamp}" ] + default_keys => [ "[properties][type]", "Feature", + "[properties][title]", "Example test data", + "[properties][description]", "Example measurements around the city of Lisbon", + "[properties][keywords]", "experiment", + "[properties][keywords]", "temperature", + "[properties][language]", "en", + "[properties][publisher]", "https://byteroad.net/", + "[properties][formats]", "HTML", + "[properties][formats]", "GeoJSON", + "[properties][contactPoint]", "Byte Road"] + } + mutate { + id => "populate_associations_1" + add_field => { "[temp][href]" => "https://emotional.byteroad.net/collections/masked/items/%{[properties][fid]}?f=json" + "[temp][rel]" => "item" + "[temp][title]" => "Link to the feature in JSON format" + "[temp][type]" => "application/geo+json" } + } + ruby { + code => ' + myarray = [event.get("[temp]")] + event.set("[properties][associations]", myarray) + ' + } + mutate { + id => "remove_features" + remove_field => [ "[properties][datetime]", + "[properties][speed_meters_per_hour]", + "[properties][s1_Temperature_Celsius]", + "[properties][decibel_dB]", + "[properties][pm_concentration_pm100_micrograms_cube_meters]", + "[properties][pm_concentration_pm10_micrograms_cube_meters]", + "[properties][pm_concentration_pm25_micrograms_cube_meters]", + "[properties][pm_count_greater03um_nan]", + "[properties][pm_count_greater05um_nan]", + "[properties][pm_count_greater100um_nan]", + "[properties][pm_count_greater10um_nan]", + "[properties][pm_count_greater25um_nan]", + "[properties][pm_count_greater50um_nan]", + "[properties][s2_Temperature_Celsius]", + "[properties][co2_concentration_ppm]", + "[properties][Humidity_percentageRH]", + "[properties][s3_Temperature_Celsius]", + "[properties][MRT]", + "[properties][UTCI]", + "[temp]"] + } +} +# Output to Elasticsearch +output { + elasticsearch { + hosts => ["elastic:9200"] + #user => "elastic" + #password => "elastic12pr2" + index => "masked_metadata" + #template_overwrite => true + #template_name => "metadata_template" + ilm_enabled => false + manage_template => false + document_id => "%{[properties][fid]}" + doc_as_upsert => true + } +} diff --git a/nginx/.htpasswd b/nginx/.htpasswd new file mode 100644 index 0000000..8f8209a --- /dev/null +++ b/nginx/.htpasswd @@ -0,0 +1 @@ +user1:$apr1$.u3LOF.P$15GZHVsny1WaVn8wBk0.F0 diff --git a/nginx/nginx.conf b/nginx/nginx.conf new file mode 100644 index 0000000..40c85ec --- /dev/null +++ b/nginx/nginx.conf @@ -0,0 +1,75 @@ + +server { + listen 80; + server_name emotional.byteroad.net; + location / { + + return 301 https://$host$request_uri; + } + location /.well-known/acme-challenge/ { + root /var/www/certbot; +} + +} + + +server { + listen 443 ssl; + server_name emotional.byteroad.net; + + location / { + proxy_pass http://pygeoapi_es:80/; + } + + location /dashboard/ { + proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; + proxy_set_header Host $http_host; + proxy_set_header X-Forwarded-Proto https; + proxy_redirect off; + proxy_connect_timeout 240; + proxy_send_timeout 240; + proxy_read_timeout 240; + proxy_pass http://kibana:5601/; + + # Enable auth basic with a message for the dialog + auth_basic "Please provide username and password"; + + # Set the file where the basic auth credentials are stored + auth_basic_user_file /etc/nginx/.htpasswd; + # Create the password first on host + # sudo htpasswd -c ./nginx/.htpasswd user1 + + } + + location /health/ { + proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; + proxy_set_header Host $http_host; + proxy_set_header X-Forwarded-Proto https; + proxy_redirect off; + proxy_connect_timeout 240; + proxy_send_timeout 240; + proxy_read_timeout 240; + # note, there is not SSL here! plain HTTP is used + proxy_pass http://elastic:9200/_cat/health; + } + + location /minio/ { + proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; + proxy_set_header Host $http_host; + proxy_set_header X-Forwarded-Proto https; + proxy_redirect off; + proxy_connect_timeout 240; + proxy_send_timeout 240; + proxy_read_timeout 240; + # note, there is not SSL here! plain HTTP is used + proxy_pass http://minio:9000/; + } + + + ssl_certificate /etc/letsencrypt/live/emotional.byteroad.net/fullchain.pem; + ssl_certificate_key /etc/letsencrypt/live/emotional.byteroad.net/privkey.pem; + + include /etc/options-ssl-nginx.conf; + #ssl_dhparam /etc/letsencrypt/ssl-dhparams.pem; + ssl_dhparam /etc/ssl/certs/dhparam.pem; +} \ No newline at end of file diff --git a/nginx/options-ssl-nginx.conf b/nginx/options-ssl-nginx.conf new file mode 100644 index 0000000..bee8f32 --- /dev/null +++ b/nginx/options-ssl-nginx.conf @@ -0,0 +1,14 @@ +# This file contains important security parameters. If you modify this file +# manually, Certbot will be unable to automatically provide future security +# updates. Instead, Certbot will print and log an error message with a path to +# the up-to-date file that you will need to refer to when manually updating +# this file. + +ssl_session_cache shared:le_nginx_SSL:10m; +ssl_session_timeout 1440m; +ssl_session_tickets off; + +ssl_protocols TLSv1.2 TLSv1.3; +ssl_prefer_server_ciphers off; + +ssl_ciphers "ECDHE-ECDSA-AES128-GCM-SHA256:ECDHE-RSA-AES128-GCM-SHA256:ECDHE-ECDSA-AES256-GCM-SHA384:ECDHE-RSA-AES256-GCM-SHA384:ECDHE-ECDSA-CHACHA20-POLY1305:ECDHE-RSA-CHACHA20-POLY1305:DHE-RSA-AES128-GCM-SHA256:DHE-RSA-AES256-GCM-SHA384"; \ No newline at end of file diff --git a/pygeoapi/docker.config.local.yml b/pygeoapi/docker.config.local.yml new file mode 100644 index 0000000..21e5958 --- /dev/null +++ b/pygeoapi/docker.config.local.yml @@ -0,0 +1,296 @@ +# ================================================================= +# +# Authors: Just van den Broecke > +# Jorge Samuel Mendes de Jesus +# Tom Kraldis +# +# Copyright (c) 2019 Just van den Broecke +# Copyright (c) 2019 Jorge Samuel Mendes de Jesus +# Copyright (c) 2020 Tom Kralidis +# +# Permission is hereby granted, free of charge, to any person +# obtaining a copy of this software and associated documentation +# files (the "Software"), to deal in the Software without +# restriction, including without limitation the rights to use, +# copy, modify, merge, publish, distribute, sublicense, and/or sell +# copies of the Software, and to permit persons to whom the +# Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be +# included in all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, +# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES +# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, +# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING +# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR +# OTHER DEALINGS IN THE SOFTWARE. +# +# ================================================================= + +server: + bind: + host: 0.0.0.0 + port: 80 + url: http://localhost/ + mimetype: application/json; charset=UTF-8 + encoding: utf-8 + gzip: false + language: en-US + cors: true + pretty_print: true + limit: 10 + # templates: /path/to/templates + map: + url: https://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png + attribution: '© OpenStreetMap contributors' + +logging: + level: ERROR + #logfile: /tmp/pygeoapi.log + +metadata: + identification: + title: pygeoapi eMOTIONAL Cities instance + description: Provides an API to eMOTIONAL Cities geospatial data + keywords: + - geospatial + - data + - api + - eMOTIONAL Cities + - Neuroscience + - Urban Planning + - H2020 + keywords_type: theme + terms_of_service: https://creativecommons.org/licenses/by/4.0/ + url: http://example.org + license: + name: CC-BY 4.0 license + url: https://creativecommons.org/licenses/by/4.0/ + provider: + name: ByteRoad + url: https://byteroad.net + contact: + name: ByteRoad + position: Maintainer + address: R. Ricardo Espirito Santo + city: Lisbon + stateorprovince: Lisbon + postalcode: 1200 + country: Portugal + phone: +xx-xxx-xxx-xxxx + fax: +xx-xxx-xxx-xxxx + email: info@byteroad.net + url: https://byteroad.net + hours: Hours of Service + instructions: During hours of service. Off on weekends. + role: pointOfContact + +resources: + + activity_level_ldn: + type: collection + title: Physical activity levels in London Boroughs in 2019 + description: Physical activity levels in London Boroughs in 2019 was extracted from the Active Lives Survey Nov 19/20. The number refers to the ratio of active people (at least 30mins per week). + keywords: + - Mesurements + - Health + - London + - eMOTIONAL Cities + links: + - type: text/html + rel: canonical + title: metadata + href: https://emotional.byteroad.net/collections/ec_catalog/items/9b32e1572c4f4c69861d0e50cf6782 + hreflang: en-US + extents: + spatial: + bbox: [-1.11,51.06,0.87,51.90] + crs: http://www.opengis.net/def/crs/OGC/1.3/CRS84 + providers: + - type: feature + name: Elasticsearch + data: http://elastic_search:9200/activity_level_ldn + id_field: GSS_CODE + format: + name: pbf + mimetype: application/vnd.mapbox-vector-tile + + cardivasular_disease_ldn: + type: collection + title: Mortality rate from all cardiovascular diseases in London Boroughs 2020 + description: Mortality rate per 100k people (under 75 mortality rate) from all cardiovascular diseases in London Boroughs 2020. + keywords: + - Mesurements + - Health + - London + - eMOTIONAL Cities + links: + - type: text/html + rel: canonical + title: metadata + href: https://emotional.byteroad.net/collections/ec_catalog/items/6c22e1572c4f4a44121d0e50cf6141 + hreflang: en-US + extents: + spatial: + bbox: [-1.11,51.06,0.87,51.90] + crs: http://www.opengis.net/def/crs/OGC/1.3/CRS84 + providers: + - type: feature + name: Elasticsearch + data: http://elastic_search:9200/cardivasular_disease_ldn + id_field: GSS_CODE + format: + name: pbf + mimetype: application/vnd.mapbox-vector-tile + + tweet_count_sample: + type: collection + title: Number of tweets in hexagon cells of London (August 2021) + description: Number of tweets in hexagon cells of London (August 2021). Twitter data was collected via Academic Research product track API. The horizontal and vertical spacing of hexagon cells are 500 meters. + keywords: + - Mesurements + - Health + - London + - eMOTIONAL Cities + links: + - type: text/html + rel: canonical + title: metadata + href: https://emotional.byteroad.net/collections/ec_catalog/items/11v2e1549c2t5669861d0e50cf6h66 + hreflang: en-US + extents: + spatial: + bbox: [-1.11,51.06,0.87,51.90] + crs: http://www.opengis.net/def/crs/OGC/1.3/CRS84 + providers: + - type: feature + name: Elasticsearch + data: http://elastic_search:9200/tweet_count_sample + id_field: id + format: + name: pbf + mimetype: application/vnd.mapbox-vector-tile + + ec_catalog: + type: collection + title: eMOTIONAL Cities Metadata catalog + description: eMOTIONAL Cities Metadata catalog (OGC API Records) + keywords: + - Mesurements + - Environmental + - Lisbon + - London + - eMOTIONAL Cities + - Neuroscience + - Urban Planning + - H2020 + links: + - type: text/html + rel: canonical + title: information + href: http://www.naturalearthdata.com/downloads/110m-cultural-vectors/110m-populated-places/ + hreflang: en-US + - type: application/gzip + rel: canonical + title: download + href: http://www.naturalearthdata.com/http//www.naturalearthdata.com/download/110m/cultural/ne_110m_populated_places_simple.zip + hreflang: en-US + extents: + spatial: + bbox: [-1.11,51.06,0.87,51.90] + crs: http://www.opengis.net/def/crs/OGC/1.3/CRS84 + providers: + - type: record + name: Elasticsearch + data: http://elastic_search:9200/ec_catalog + id_field: id + time_field: datetime + + DATASET: + type: collection + title: Example features + description: Tech demo data from eMOTIONAL Cities. + keywords: + - Mesurements + - Environmental + - Lisbon + - eMOTIONAL Cities + - Neuroscience + - Urban Planning + - H2020 + links: + - type: text/html + rel: canonical + title: information + href: http://www.naturalearthdata.com/downloads/110m-cultural-vectors/110m-populated-places/ + hreflang: en-US + - type: application/gzip + rel: canonical + title: download + href: http://www.naturalearthdata.com/http//www.naturalearthdata.com/download/110m/cultural/ne_110m_populated_places_simple.zip + hreflang: en-US + extents: + spatial: + bbox: [-180,-90,180,90] + crs: http://www.opengis.net/def/crs/OGC/1.3/CRS84 + providers: + - type: feature + name: Elasticsearch + #Note elastic_search is the docker container of ES the name is defined in the docker-compose.yml + data: http://elastic_search:9200/DATASET + id_field: fid + - type: tile + name: MVT + data: http://minio:9000/DATASET/{z}/{x}/{y} + #data: tests/data/tiles/DATASET + options: + metadata_format: tilejson # default | tilejson + bounds: [[-9.1353880000000007, 38.7098030000000008],[-9.1282750000000004, 38.7172610000000006]] + zoom: + min: 0 + max: 16 + schemes: + - WorldCRS84Quad + format: + name: pbf + mimetype: application/vnd.mapbox-vector-tile + + DATASET_rec: + type: collection + title: Example metadata + description: Tech demo metadata from eMOTIONAL Cities. One metadata record for each feature. + keywords: + - Mesurements + - Environmental + - Lisbon + - eMOTIONAL Cities + - Neuroscience + - Urban Planning + - H2020 + links: + - type: text/html + rel: canonical + title: information + href: http://www.naturalearthdata.com/downloads/110m-cultural-vectors/110m-populated-places/ + hreflang: en-US + - type: application/gzip + rel: canonical + title: download + href: http://www.naturalearthdata.com/http//www.naturalearthdata.com/download/110m/cultural/ne_110m_populated_places_simple.zip + hreflang: en-US + extents: + spatial: + bbox: [-9.1353880000000007,38.7098030000000008,-9.1282750000000004,38.7172610000000006] + crs: http://www.opengis.net/def/crs/OGC/1.3/CRS84 + providers: + - type: record + name: Elasticsearch + #Note elastic_search is the docker container of ES the name is defined in the docker-compose.yml + data: http://elastic_search:9200/DATASET_metadata + id_field: fid + time_field: datetime + diff --git a/pygeoapi/docker.config.yml b/pygeoapi/docker.config.yml new file mode 100644 index 0000000..f5125c3 --- /dev/null +++ b/pygeoapi/docker.config.yml @@ -0,0 +1,283 @@ +# ================================================================= +# +# Authors: Just van den Broecke > +# Jorge Samuel Mendes de Jesus +# Tom Kraldis +# +# Copyright (c) 2019 Just van den Broecke +# Copyright (c) 2019 Jorge Samuel Mendes de Jesus +# Copyright (c) 2020 Tom Kralidis +# +# Permission is hereby granted, free of charge, to any person +# obtaining a copy of this software and associated documentation +# files (the "Software"), to deal in the Software without +# restriction, including without limitation the rights to use, +# copy, modify, merge, publish, distribute, sublicense, and/or sell +# copies of the Software, and to permit persons to whom the +# Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be +# included in all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, +# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES +# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, +# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING +# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR +# OTHER DEALINGS IN THE SOFTWARE. +# +# ================================================================= + +server: + bind: + host: 0.0.0.0 + port: 80 + url: https://emotional.byteroad.net/ + mimetype: application/json; charset=UTF-8 + encoding: utf-8 + gzip: false + language: en-US + cors: true + pretty_print: true + limit: 10 + # templates: /path/to/templates + map: + url: https://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png + attribution: '© OpenStreetMap contributors' + +logging: + level: ERROR + #logfile: /tmp/pygeoapi.log + +metadata: + identification: + title: pygeoapi eMOTIONAL Cities instance + description: Provides an API to eMOTIONAL Cities geospatial data + keywords: + - geospatial + - data + - api + - eMOTIONAL Cities + - Neuroscience + - Urban Planning + - H2020 + keywords_type: theme + terms_of_service: https://creativecommons.org/licenses/by/4.0/ + url: http://example.org + license: + name: CC-BY 4.0 license + url: https://creativecommons.org/licenses/by/4.0/ + provider: + name: ByteRoad + url: https://pygeoapi.io + contact: + name: ByteRoad + position: Maintainer + address: R. Ricardo Espirito Santo + city: Lisbon + stateorprovince: Lisbon + postalcode: 1200 + country: Portugal + phone: +xx-xxx-xxx-xxxx + fax: +xx-xxx-xxx-xxxx + email: info@byteroad.net + url: https://byteroad.net + hours: Hours of Service + instructions: During hours of service. Off on weekends. + role: pointOfContact + +resources: + + activity_level_ldn: + type: collection + title: Physical activity levels in London Boroughs in 2019 + description: Physical activity levels in London Boroughs in 2019 was extracted from the Active Lives Survey Nov 19/20. The number refers to the ratio of active people (at least 30mins per week). + keywords: + - Mesurements + - Health + - London + links: + - type: text/html + rel: canonical + title: metadata + href: https://emotional.byteroad.net/collections/ec_catalog/items/9b32e1572c4f4c69861d0e50cf6782 + hreflang: en-US + extents: + spatial: + bbox: [-1.11,51.06,0.87,51.90] + crs: http://www.opengis.net/def/crs/OGC/1.3/CRS84 + providers: + - type: feature + name: Elasticsearch + data: http://elastic_search:9200/activity_level_ldn + id_field: GSS_CODE + + cardivasular_disease_ldn: + type: collection + title: Mortality rate from all cardiovascular diseases in London Boroughs 2020 + description: Mortality rate per 100k people (under 75 mortality rate) from all cardiovascular diseases in London Boroughs 2020. + keywords: + - Mesurements + - Health + - London + links: + - type: text/html + rel: canonical + title: metadata + href: https://emotional.byteroad.net/collections/ec_catalog/items/6c22e1572c4f4a44121d0e50cf6141 + hreflang: en-US + extents: + spatial: + bbox: [-1.11,51.06,0.87,51.90] + crs: http://www.opengis.net/def/crs/OGC/1.3/CRS84 + providers: + - type: feature + name: Elasticsearch + data: http://elastic_search:9200/cardivasular_disease_ldn + id_field: GSS_CODE + + tweet_count_sample: + type: collection + title: Number of tweets in hexagon cells of London (August 2021) + description: Number of tweets in hexagon cells of London (August 2021). Twitter data was collected via Academic Research product track API. The horizontal and vertical spacing of hexagon cells are 500 meters. + keywords: + - Mesurements + - Health + - London + links: + - type: text/html + rel: canonical + title: metadata + href: https://emotional.byteroad.net/collections/ec_catalog/items/11v2e1549c2t5669861d0e50cf6h66 + hreflang: en-US + extents: + spatial: + bbox: [-1.11,51.06,0.87,51.90] + crs: http://www.opengis.net/def/crs/OGC/1.3/CRS84 + providers: + - type: feature + name: Elasticsearch + data: http://elastic_search:9200/tweet_count_sample + id_field: id + + ec_catalog: + type: collection + title: eMOTIONAL Cities Metadata catalog + description: eMOTIONAL Cities Metadata catalog (OGC API Records) + keywords: + - Mesurements + - Environmental + - Lisbon + - London + - eMOTIONAL Cities + - Neuroscience + - Urban Planning + - H2020 + links: + - type: text/html + rel: canonical + title: information + href: http://www.naturalearthdata.com/downloads/110m-cultural-vectors/110m-populated-places/ + hreflang: en-US + - type: application/gzip + rel: canonical + title: download + href: http://www.naturalearthdata.com/http//www.naturalearthdata.com/download/110m/cultural/ne_110m_populated_places_simple.zip + hreflang: en-US + extents: + spatial: + bbox: [-1.11,51.06,0.87,51.90] + crs: http://www.opengis.net/def/crs/OGC/1.3/CRS84 + providers: + - type: record + name: Elasticsearch + data: http://elastic_search:9200/ec_catalog + id_field: id + time_field: datetime + + DATASET: + type: collection + title: Example features + description: Tech demo data from eMOTIONAL Cities with Tiles. + keywords: + - Mesurements + - Environmental + - Lisbon + - eMOTIONAL Cities + - Neuroscience + - Urban Planning + - H2020 + links: + - type: text/html + rel: canonical + title: information + href: http://www.naturalearthdata.com/downloads/110m-cultural-vectors/110m-populated-places/ + hreflang: en-US + - type: application/gzip + rel: canonical + title: download + href: http://www.naturalearthdata.com/http//www.naturalearthdata.com/download/110m/cultural/ne_110m_populated_places_simple.zip + hreflang: en-US + extents: + spatial: + bbox: [-180,-90,180,90] + crs: http://www.opengis.net/def/crs/OGC/1.3/CRS84 + providers: + - type: feature + name: Elasticsearch + #Note elastic_search is the docker container of ES the name is defined in the docker-compose.yml + data: http://elastic_search:9200/DATASET + id_field: fid + - type: tile + name: MVT + data: http://minio:9000/DATASET/{z}/{x}/{y} + #data: tests/data/tiles/DATASET + options: + metadata_format: tilejson # default | tilejson + bounds: [[-9.1353880000000007, 38.7098030000000008],[-9.1282750000000004, 38.7172610000000006]] + zoom: + min: 0 + max: 16 + schemes: + - WorldCRS84Quad + format: + name: pbf + mimetype: application/vnd.mapbox-vector-tile + + DATASET_rec: + type: collection + title: Example metadata + description: Tech demo metadata from eMOTIONAL Cities. One metadata record for each feature. + keywords: + - Mesurements + - Environmental + - Lisbon + - eMOTIONAL Cities + - Neuroscience + - Urban Planning + - H2020 + links: + - type: text/html + rel: canonical + title: information + href: http://www.naturalearthdata.com/downloads/110m-cultural-vectors/110m-populated-places/ + hreflang: en-US + - type: application/gzip + rel: canonical + title: download + href: http://www.naturalearthdata.com/http//www.naturalearthdata.com/download/110m/cultural/ne_110m_populated_places_simple.zip + hreflang: en-US + extents: + spatial: + bbox: [-9.1353880000000007,38.7098030000000008,-9.1282750000000004,38.7172610000000006] + crs: http://www.opengis.net/def/crs/OGC/1.3/CRS84 + providers: + - type: record + name: Elasticsearch + #Note elastic_search is the docker container of ES the name is defined in the docker-compose.yml + data: http://elastic_search:9200/DATASET_metadata + id_field: fid + time_field: datetime diff --git a/pygeoapi/es-entrypoint.sh b/pygeoapi/es-entrypoint.sh new file mode 100755 index 0000000..854c2ac --- /dev/null +++ b/pygeoapi/es-entrypoint.sh @@ -0,0 +1,51 @@ +#!/bin/sh +# ================================================================= +# +# Authors: Just van den Broecke > +# Jorge Samuel Mendes de Jesus +# +# Copyright (c) 2019 Just van den Broecke +# Copyright (c) 2019 Jorge Samuel Mendes de Jesus +# +# Permission is hereby granted, free of charge, to any person +# obtaining a copy of this software and associated documentation +# files (the "Software"), to deal in the Software without +# restriction, including without limitation the rights to use, +# copy, modify, merge, publish, distribute, sublicense, and/or sell +# copies of the Software, and to permit persons to whom the +# Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be +# included in all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, +# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES +# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, +# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING +# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR +# OTHER DEALINGS IN THE SOFTWARE. +# +# ================================================================= + +set +e + +dataset="${DATASET:-obs}" + +echo "Update dataset name to $dataset" + +# Workaround to avoid resource busy +cp /pygeoapi/local.config-orig.yml /pygeoapi/local.config.yml +sed -i "s/DATASET/$dataset/g" /pygeoapi/local.config.yml + +echo "Install Curl" + +apt-get update -y && +apt-get install curl -y && + +echo "Waiting for ElasticSearch container..." && + +# First wait for ES to be up and then execute the original pygeoapi entrypoint. +/wait-for-elasticsearch.sh http://elastic_search:9200 /entrypoint.sh || echo "ES failed: $?, exit" && exit 1 diff --git a/pygeoapi/wait-for-elasticsearch.sh b/pygeoapi/wait-for-elasticsearch.sh new file mode 100755 index 0000000..3dc329a --- /dev/null +++ b/pygeoapi/wait-for-elasticsearch.sh @@ -0,0 +1,74 @@ +#!/bin/sh +# ================================================================= +# +# Authors: Just van den Broecke > +# Jorge Samuel Mendes de Jesus +# +# Copyright (c) 2019 Just van den Broecke +# Copyright (c) 2019 Jorge Samuel Mendes de Jesus +# +# Permission is hereby granted, free of charge, to any person +# obtaining a copy of this software and associated documentation +# files (the "Software"), to deal in the Software without +# restriction, including without limitation the rights to use, +# copy, modify, merge, publish, distribute, sublicense, and/or sell +# copies of the Software, and to permit persons to whom the +# Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be +# included in all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, +# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES +# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, +# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING +# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR +# OTHER DEALINGS IN THE SOFTWARE. +# +# ================================================================= + +set -e + +host="$1" +shift +cmd="$@" + + +until $(curl --output /dev/null --silent --head --fail "$host") ; do + echo 'Checking if Elasticsearch server is up' + sleep 5 + counter=$((counter+1)) +done + +# First wait for ES to start... +response=$(curl $host) + +until [ "$response" = "200" ] ; do + response=$(curl --write-out %{http_code} --silent --output /dev/null "$host") + >&2 echo "Elasticsearch is up but unavailable - No Reponse - sleeping" + sleep 10 + +done + + +# next wait for ES status to turn to green or yellow +health="$(curl -fsSL "$host/_cat/health?h=status")" +health="$(echo "$health" | sed -r 's/^[[:space:]]+|[[:space:]]+$//g')" # trim whitespace (otherwise we'll have "green ") + +until [ "$health" = 'yellow' ] || [ "$health" = 'green' ] ; do + health="$(curl -fsSL "$host/_cat/health?h=status")" + health="$(echo "$health" | sed -r 's/^[[:space:]]+|[[:space:]]+$//g')" + >&2 echo "Elasticsearch status is not green or yellow - sleeping" + sleep 10 +done + +# Adding some extra time to populate indexes +sleep 30 + +>&2 echo "Elasticsearch is up" + + +exec $cmd