From adb58d030ec927e5d0f529f0fbf71a8f627dce30 Mon Sep 17 00:00:00 2001 From: Tatyana Laptenko Date: Tue, 21 Dec 2021 11:15:18 +0300 Subject: [PATCH] tc_706_Split_Browser_view --- .../Split_view_via_coordinates.md | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 docs/test-cases/Split_view_via_coordinates_and_search_control/Split_view_via_coordinates.md diff --git a/docs/test-cases/Split_view_via_coordinates_and_search_control/Split_view_via_coordinates.md b/docs/test-cases/Split_view_via_coordinates_and_search_control/Split_view_via_coordinates.md new file mode 100644 index 000000000..4ed72ef99 --- /dev/null +++ b/docs/test-cases/Split_view_via_coordinates_and_search_control/Split_view_via_coordinates.md @@ -0,0 +1,31 @@ +# Splitting browser for location via the coordinates and search control + +Test verifies + - splitting browser for any location of interest - via the unified coordinates and search control. + +**Prerequisites**: + +Dataset = **SV_Sample2**, .vcf = **[sample_2-lumpy.vcf](https://ngb-oss-builds.s3.amazonaws.com/public/data/demo/ngb_demo_data/sample_2-lumpy.vcf.gz)**, +gene = [Homo_sapiens.GRCh38.gtf.gz](https://ngb-oss-builds.s3.amazonaws.com/public/data/genome/grch38/Homo_sapiens.GRCh38.gtf.gz) + + +| Steps | Actions | Expected results | +| :---: | --- | --- | +| 1 | Login to NGB | | +| 2 | Go to **DATASETS** panel|| +| 3 | Select **SV_Sample2** dataset| **Summary** view is displayed in the **BROWSER** panel| +| 4 | Go to coordinates control in the **BROWSER** header | | +| 5 | Set 2 coordinates separated by space: **2: 29223860** **X: 276322 - 303356**| | +| 6 | Click **Enter** button|
  • BROWSER panel is splitted on two panels:
    main one by default,
    and the additional panel| +| 7 | Look at main BROWSER window|
  • **Chr 2: 29223860 - 29223860** coordinate displays in the BROWSER
  • The unified coordinates and search control are avaliable to changing | +| 8 | Look at additional BROWSER window|
  • **Chr X: 276322 - 303356** coordinate displays in the BROWSER
  • The unified coordinates and search control are disabled to changing
  • **Expand** and **Close** buttons are display in the header of additional BROWSER only| +| 9 | Repeat steps 4-9 for every 2 pair of coordinates shown in the table below| +
    + +| Steps | Coordinates Format |First Coordinate| Second Coordinate| Expected results | +| :---: | --- | --- | --- | --- | +| 1 |
    Chr:Coordinate
    Chr: Start-Finish coordinate| 2: 29223860 | X: 276322 - 303356 |
  • Main Browser = Chr 2: 29223760-29223960
    Central Position = **29223860**
  • Additional Browser = **Chr X: 276322 - 303356**| +| 2 |
    Chr: Start-Finish coordinate
    Feature Name | 1: 11869 - 14409 | KRAS |
  • Main Browser = **Chr 1: 11869 - 144090**
  • Additional Browser = Chr 12: 25204789 - 25250936
    **KRAS** gene displays in the **GENE** track | +| 3 |
    Feature Name
    Coordinate | BRCA1| 11869 |
  • Main Browser = Chr 17: 43044295 - 43170245
    **BRCA1** gene displays in the **GENE** track
  • Additional Browser = Chr 12: 11769 - 11969
    Central position = **11869**
    *(the location is opened on the current chromosome)*| +| 4 |
    Coordinate
    Start-Finish Coordinate | 31358993 | 1020123 - 1056118|
  • Main Browser = Chr 17: 31358893 - 31359093
    Central Position = **31358993**
    *(the location is opened on the current chromosome)*
  • Additional Browser = **Chr 17: 1020123 - 1056118**
    *(the location is opened on the current chromosome)*| +| 5 | Chr: Coordinate | 4: 25665006 | - |
  • The main window is displayed only. Additional window is closed.
  • Main Browser = Chr 4: 25664906 - 25665106
    Central Position = **25665006** | \ No newline at end of file