diff --git a/README.md b/README.md index a759c21..9832002 100644 --- a/README.md +++ b/README.md @@ -43,7 +43,7 @@ CHROM POS REF ALT FILTER AF AN BaseQRankSum ClippingRankSum MA605_PI MA605_GT MA ### Report simiplified output (all available fields) for sample MA605,ms01e -python3 vcf_simplify-v2.py --vcf F1.phased_variants.Final02.vcf --out simplified_vcf.txt --samples MA605,ms01e + python3 vcf_simplify-v2.py --vcf F1.phased_variants.Final02.vcf --out simplified_vcf.txt --samples MA605,ms01e ### Expected output ``` @@ -55,7 +55,7 @@ CHROM POS ID REF ALT QUAL FILTER AF BaseQRankSum ClippingRankSum DP DS END Exces
### Report simplified output in "long" format -python3 vcf_simplify-v2.py --vcf F1.phased_variants.Final02.vcf --out simplified_vcf.txt --infos AF,AN,BaseQRankSum,ClippingRankSum --formats PI,GT,PG --pre_header CHROM,POS,REF,ALT,FILTER --mode long --samples MA605,ms01e + python3 vcf_simplify-v2.py --vcf F1.phased_variants.Final02.vcf --out simplified_vcf.txt --infos AF,AN,BaseQRankSum,ClippingRankSum --formats PI,GT,PG --pre_header CHROM,POS,REF,ALT,FILTER --mode long --samples MA605,ms01e ### Expected output ```