diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index 90d4c1d1..95c7bd10 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -40,6 +40,7 @@ jobs: checking top-level files .* NOTE unit-test-report-brand: >- https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/formatters.png + deps-installation-method: setup-r-dependencies r-cmd-non-cran: name: R CMD Check (non-CRAN) 🧬 uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main @@ -60,6 +61,7 @@ jobs: checking Rd .usage sections .* NOTE checking for unstated dependencies in vignettes .* NOTE checking top-level files .* NOTE + deps-installation-method: setup-r-dependencies coverage: name: Coverage πŸ“” uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main @@ -68,6 +70,7 @@ jobs: with: additional-env-vars: | NOT_CRAN=true + deps-installation-method: setup-r-dependencies linter: if: github.event_name != 'push' name: SuperLinter πŸ¦Έβ€β™€οΈ @@ -78,6 +81,7 @@ jobs: secrets: REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} with: + deps-installation-method: setup-r-dependencies auto-update: true gitleaks: name: gitleaks πŸ’§ diff --git a/staged_dependencies.yaml b/staged_dependencies.yaml deleted file mode 100644 index 0c5ef5ab..00000000 --- a/staged_dependencies.yaml +++ /dev/null @@ -1,38 +0,0 @@ -current_repo: - repo: insightsengineering/formatters - host: https://github.com -upstream_repos: {} -downstream_repos: - insightsengineering/rlistings: - repo: insightsengineering/rlistings - host: https://github.com - insightsengineering/rtables: - repo: insightsengineering/rtables - host: https://github.com - insightsengineering/tern: - repo: insightsengineering/tern - host: https://github.com - insightsengineering/tern.gee: - repo: insightsengineering/tern.gee - host: https://github.com - insightsengineering/tern.mmrm: - repo: insightsengineering/tern.mmrm - host: https://github.com - insightsengineering/tern.rbmi: - repo: insightsengineering/tern.rbmi - host: https://github.com - insightsengineering/teal.osprey: - repo: insightsengineering/teal.osprey - host: https://github.com - insightsengineering/teal.modules.clinical: - repo: insightsengineering/teal.modules.clinical - host: https://github.com - insightsengineering/chevron: - repo: insightsengineering/chevron - host: https://github.com - insightsengineering/citril: - repo: insightsengineering/citril - host: https://github.com - insightsengineering/scda.test: - repo: insightsengineering/scda.test - host: https://github.com