Make sure all CI pipelines are green before release

[donyunardi]

Summary

Review all CI/CD pipeline (daily, Scheduled, etc) and make sure it's green before release.

Priority 1 - the frameworks

• teal.code
• teal.widgets
• teal.data
• teal.reporter
• teal.slice
• teal.transform
• teal

Priority 2

• tmg
• tmc

Priority 3

• osprey
• teal.osprey
• goshawk
• teal.goshawk
• hermes
• teal.modules.hermes
• helios
• tel.modules.helios

[donyunardi]

teal.widgets ✅

Only Dependency Test - max failed in Scheduled pipeline

• Fix failing Dependencies Test - max teal.widgets#276

Assuming we're not adding formatters to teal.widgets dependency, this workflow will continue to fail until newest rtables/formatters are released.

teal.code ✅

revdepcheck failed because it's trying to run the teal.data 0.6.0 unit tests against teal.code main branch:
https://github.com/insightsengineering/teal.code/actions/runs/12532241545/job/34950765175

I believe this will go away once we release teal.data.

teal.data ✅

We have issue with min isolated test:

• update testthat version teal.data#359
• upversion withr teal.data#360

Only release is failing which is expected and will be resolved once we release teal.code:
https://github.com/insightsengineering/teal.data/actions/runs/12714861412

teal.slice

• Fix scheduled inputs teal.slice#634

min_cohort is failing:
https://github.com/insightsengineering/teal.slice/actions/runs/12714930133/job/35446110038

teal.transform

teal.reporter

teal

[shajoezhu]

hi @donyunardi , we will release new formatters/rtables this month, perhaps we should meet and discuss

[m7pr]

Just reviewed Priority 1 list and here is the status

Passing:

• 🟢 teal.code failing in revdepcheck link but will pass once teal.data is released
• 🟢 teal.logger - all fine link
• 🟢 teal.widgets all fine link

Failing: - Error in deferred_run(env) : could not find function "deferred_run"

• 🟥 teal.slice - failing in Dependency Tests link
• 🟥 teal failing in all 4 Dependency Tests link
• 🟥 teal.data failing in Dependency Test - release link
• 🟥 teal.reporter failing in Dependency Tests - release and min_isolated link
• 🟥 teal.transform failing in all 4 Dependency Tests link

[m7pr]

Experimented with teal.data and I was able to overcome the issue

Error in deferred_run(env) : could not find function "deferred_run"

by loading withr at the beginning of the action's script
insightsengineering/r-verdepcheck-action#24

I will now restart all jobs that were failing

[m7pr]

Current Priority 1 list status

Passing:

• 🟢 teal.logger - all fine link
• 🟢 teal.widgets all fine link

Failing but will pass once teal.code and teal.data are released:

• 🟢 teal.data
• 🟢 teal.transform
• 🟢 teal.code

Failing:

• 🟥 teal.slice - failing in min_isolated link can not install SummarizedExperiment
• 🟥 teal failing in all 3 Dependency Tests link can't install rtables
• 🟥 teal.reporter failing in min_isolated link 5 tests are failing

[m7pr]

Latest update

Current Priority 1 list status

Passing:

• 🟢 teal.logger - all fine link
• 🟢 teal.widgets all fine link
• 🟢 teal.reporter failing only in release strategy

Failing but will pass once teal.code and teal.data are released:

• 🟢 teal.data
• 🟢 teal.transform
• 🟢 teal.code

Failing:

• 🟥 teal.slice - failing in min_isolated link can not install SummarizedExperiment
• 🟥 teal failing in all 3 Dependency Tests link can't install rtables

[m7pr]

Latest update

Current Priority 1 list status

Passing:

• 🟢 teal.logger all fine link
• 🟢 teal.widgets all fine link
• 🟢 teal.reporter failing only in release strategy
• 🟢 teal.slice failing only in release strategy

Failing but will pass once teal.code and teal.data are released:

• 🟢 teal.data
• 🟢 teal.transform
• 🟢 teal.code

Failing:

• 🟥 teal failing in all 3 Dependency Tests link can't install rtables

[m7pr]

Latest update

Current Priority 1 list status

Passing:

• 🟢 teal.logger all fine link
• 🟢 teal.widgets all fine link
• 🟢 teal.reporter failing only in release strategy
• 🟢 teal.slice failing only in release strategy
• 🟢 teal failing only in release strategy

Failing but will pass once teal.code and teal.data are released:

• 🟢 teal.data
• 🟢 teal.transform
• 🟢 teal.code

[m7pr]

Will continue with tmg and tmc right now

[m7pr]

Running builds for tmc and tmg today

• update packages for the scheduled build teal.modules.clinical#1314
• Ensures required packages are in Imports section teal.modules.general#774

[m7pr]

For both tmg and tmc I am struggling with inability to install teal.slice