README.md

deBruijn-dna-assembly

This tools allows to align DNA short sequences by creating deBrujin graph.

Usage

Download the repo:

git clone https://github.com/juanesarango/deBruijn-dna-assembly
cd deBruijn-dna-assembly

To compile the tool into a binary:

g++ -o ./bin/deBrujinDNA main.cpp

To run the example:

./bin/deBrujinDNA

References

Understanding deBruijn Graph for DNA Assembly:

https://training.galaxyproject.org/training-material/topics/assembly/tutorials/debruijn-graph-assembly/tutorial.html

https://gist.github.com/BenLangmead/5298132