CMakeLists.txt

PROJECT(ARCTIC)
# Project: ARCTIC (Automatic Regional Cortical ThICkness)

cmake_minimum_required(VERSION 2.6)

IF(CMAKE_COMPILER_2005)
  ADD_DEFINITIONS(-D_CRT_SECURE_NO_DEPRECATE -D_CRT_NONSTDC_NO_DEPRECATE)
ENDIF(CMAKE_COMPILER_2005)

IF (${CMAKE_SOURCE_DIR} STREQUAL ${ARCTIC_SOURCE_DIR})
  SET (LIBRARY_OUTPUT_PATH ${ARCTIC_BINARY_DIR}/lib CACHE PATH "Single output directory for building all libraries.")
  SET (EXECUTABLE_OUTPUT_PATH ${ARCTIC_BINARY_DIR}/bin CACHE PATH "Single output directory for building all executables.")
ENDIF (${CMAKE_SOURCE_DIR} STREQUAL ${ARCTIC_SOURCE_DIR})

#-----------------------------------------------------------------------------
# Configure Dart testing support.
OPTION(BUILD_TESTING "Compile Testing." OFF)
IF(BUILD_TESTING)
  ENABLE_TESTING()
  INCLUDE(CTest)
ENDIF(BUILD_TESTING)

FIND_PACKAGE(BatchMake REQUIRED)
INCLUDE(${BatchMake_USE_FILE})

FIND_PACKAGE(Slicer3 QUIET NO_DEFAULT_PATH)
IF(Slicer3_FOUND)
  INCLUDE(${Slicer3_USE_FILE})
  slicer3_set_default_install_prefix_for_external_projects()
ELSE(Slicer3_FOUND)

  FIND_PACKAGE(SlicerExecutionModel REQUIRED)
  IF (SlicerExecutionModel_FOUND)
    INCLUDE(${SlicerExecutionModel_USE_FILE})
    INCLUDE(${GenerateCLP_USE_FILE})
  ENDIF(SlicerExecutionModel_FOUND)

  FIND_PACKAGE(ITK REQUIRED)
  IF (ITK_FOUND)
    INCLUDE(${ITK_USE_FILE})
  ELSE(ITK_FOUND)
    MESSAGE(FATAL_ERROR, "ITK not found. Please set ITK_DIR.")
  ENDIF (ITK_FOUND)

  FIND_PACKAGE(VTK REQUIRED)
  IF (VTK_FOUND)
    INCLUDE(${VTK_USE_FILE})
  ELSE(VTK_FOUND)
    MESSAGE(FATAL_ERROR Please set VTK_DIR.)
  ENDIF (VTK_FOUND)

ENDIF(Slicer3_FOUND)

OPTION(COMPILE_ImageStat "Compile ImageStat." ON)
IF( COMPILE_ImageStat )
  SUBDIRS(ImageStat)
ENDIF()
OPTION(COMPILE_ImageMath "Compile ImageMath." ON)
IF( COMPILE_ImageMath )
  SUBDIRS(ImageMath)
ENDIF()
OPTION(COMPILE_SegPostProcess "Compile SegPostProcess." ON)
IF( COMPILE_SegPostProcess )
  SUBDIRS(SegPostProcess)
ENDIF()
OPTION(COMPILE_CortThick "Compile CortThick." ON)
IF( COMPILE_CortThick )
  SUBDIRS(CortThick)
ENDIF()
OPTION(COMPILE_ITKEMS "Compile ITKEMS." ON)
IF( COMPILE_ITKEMS )
  SUBDIRS(itkEMS)
ENDIF()
OPTION(COMPILE_ARCTIC "Compile ARCTIC." ON)
IF( COMPILE_ARCTIC )
  SET (ARCTIC_SOURCE ARCTIC.cxx ARCTICParameters.cxx ARCTICComputation.cxx)
  GENERATECLP(ARCTIC.cxx ARCTIC.xml)
  ADD_EXECUTABLE ( ARCTIC ${ARCTIC_SOURCE})
  TARGET_LINK_LIBRARIES ( ARCTIC ${ITK_LIBRARIES} ${BatchMake_LIBRARIES})

  ADD_TEST(ARCTICTest1 ${LIBRARY_OUTPUT_PATH}/Slicer3/Plugins/ARCTIC --help)
  ADD_TEST(ARCTICTest2 ${LIBRARY_OUTPUT_PATH}/Slicer3/Plugins/ARCTIC --version)
  IF(Slicer3_FOUND)
    slicer3_set_plugins_output_path(ARCTIC)
    slicer3_install_plugins(ARCTIC)
  ENDIF()
ENDIF()