docker-compose.yml

version: '3'

services:
  web:
    container_name: las
    restart: always
    env_file:
      - .env
    build: ./web/
    ports:
      - 443:443
      - 80:80
    links:
      - lasmysql:lasmysql
      - lasmongodb:lasmongodb
      - lasneo4j:lasneo4j
    volumes:
      - ./web/las:/srv/www
#      - ./web/adminScripts:/adminScripts
      - ./web/ssl:/etc/apache2/ssl
      - ./blat:/blat
    depends_on:
      - lasmysql
      - lasmongodb
      - lasneo4j
      - blat-genome
      - blat-transcriptome
    extra_hosts:
      - www.mylas.com:127.0.0.1

  lasmysql:
    container_name: lasmysql
    image: mysql:5.7.22
    restart: always
    env_file:
      - .env
    volumes:
      - ./mysql/docker-entrypoint-initdb.d:/docker-entrypoint-initdb.d
      - dbdata:/var/lib/mysql
      - ./mysql/conf:/etc/mysql/mysql.conf.d
    expose:
      - "3306"

  lasphpmyadmin:
    container_name: lasphpmyadmin
    image: phpmyadmin/phpmyadmin
    env_file:
      - .env
    restart: always
    ports:
      - 8082:80
    volumes:
      - /sessions
    depends_on:
      - lasmysql

  lasmongodb:
    restart: always
    image: mongo:3.6.4
    container_name: lasmongodb
    env_file:
      - .env
    volumes:
      - mongodata:/data/db
    expose:
        - "27017"
    command: mongod --logpath=/dev/null # --quiet
    
  lasneo4j:
    image: neo4j:2.3.11-enterprise
    restart: always
    container_name: lasneo4j
    env_file:
      - .env
    expose:
      - "7474"
    ports:
      - "7475:7474"
    volumes:
      - neodata:/data/
      - ./neo4j-data:/neo4j-data
  
  blat-genome:
    container_name: blat-genome
    restart: always
    env_file:
      - .env
    build: ./blat-genome/
    expose:
      - "11515"
    volumes:
      - ./blat/bin:/blat/bin
      - ./blat/seq/GRCh37.p13.chrom.2bit:/blat/seq/GRCh37.p13.chrom.2bit

  blat-transcriptome:
    container_name: blat-transcriptome
    restart: always
    env_file:
      - .env
    build: ./blat-transcriptome/
    expose:
      - "11516"
    volumes:
      - ./blat/bin:/blat/bin
      - ./blat/seq/gencode.v19.pc_transcripts.simple.2bit:/blat/seq/gencode.v19.pc_transcripts.simple.2bit

volumes:
  dbdata:
  mongodata:
  neodata: