From 9263be883adb25c7a7662b358357464ec08a6fa9 Mon Sep 17 00:00:00 2001 From: Dugal Harris Date: Fri, 18 Oct 2024 22:08:01 +0200 Subject: [PATCH] add CLI equivalents --- docs/examples/l7_composite.ipynb | 11319 +---------------------------- 1 file changed, 383 insertions(+), 10936 deletions(-) diff --git a/docs/examples/l7_composite.ipynb b/docs/examples/l7_composite.ipynb index d031329..7df209a 100644 --- a/docs/examples/l7_composite.ipynb +++ b/docs/examples/l7_composite.ipynb @@ -8,6 +8,8 @@ "\n", "This example aims to create a Landsat-7 cloud/shadow free composite on, or as close as possible to 22-23 November 2016. The area of interest covers a range of natural, agricultural and urban areas around Stellenbosch, South Africa.\n", "\n", + "CLI commands equivalent to the API code snippets are given in the comments where possible.\n", + "\n", "### Setup\n", "\n", "`geemap` is required to run the notebook. You can uncomment the cell below to install it, if it isn't installed already." @@ -40,7 +42,7 @@ "import geemap.foliumap as geemap\n", "\n", "# initialise earth engine with the high-volume endpoint\n", - "gd.Initialize()\n" + "gd.Initialize()" ] }, { @@ -55,6 +57,40 @@ "execution_count": 3, "metadata": {}, "outputs": [ + { + "data": { + "text/html": [ + "\n", + " \n", + " " + ], + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, { "name": "stdout", "output_type": "stream", @@ -84,21 +120,27 @@ "source": [ "# geojson search polygon\n", "region = {\n", - " 'type': 'Polygon', 'coordinates': [[\n", - " (19.075, -34.115), (19.075, -33.731), (18.723, -33.731),\n", - " (18.723, -34.115), (19.075, -34.115)\n", - " ]]\n", + " 'type': 'Polygon',\n", + " 'coordinates': [\n", + " [\n", + " (19.075, -34.115),\n", + " (19.075, -33.731),\n", + " (18.723, -33.731),\n", + " (18.723, -34.115),\n", + " (19.075, -34.115),\n", + " ]\n", + " ],\n", "}\n", "\n", "# create and search the Landsat-7 collection\n", "coll = gd.MaskedCollection.from_name('LANDSAT/LE07/C02/T1_L2')\n", - "filt_coll = coll.search(\n", - " '2016-11-01', '2016-12-19', region, cloudless_portion=40\n", - ")\n", + "filt_coll = coll.search('2016-11-01', '2016-12-19', region, cloudless_portion=40)\n", "\n", "# print the search results\n", "print(filt_coll.schema_table, end='\\n\\n')\n", - "print(filt_coll.properties_table)\n" + "print(filt_coll.properties_table)\n", + "\n", + "# !geedim search -c l7-c2-l2 -s 2016-11-01 -e 2016-12-19 --bbox 18.723 -34.115 19.075 -33.731 -cp 40" ] }, { @@ -124,14 +166,45 @@ "cell_type": "code", "execution_count": 4, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "\n", + " \n", + " " + ], + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], "source": [ - "mosaic_im = filt_coll.composite(\n", - " method=gd.CompositeMethod.mosaic, date='2016-11-22'\n", - ")\n", - "q_mosaic_im = filt_coll.composite(\n", - " method=gd.CompositeMethod.q_mosaic, date='2016-11-22'\n", - ")" + "mosaic_im = filt_coll.composite(method=gd.CompositeMethod.mosaic, date='2016-11-22')\n", + "q_mosaic_im = filt_coll.composite(method=gd.CompositeMethod.q_mosaic, date='2016-11-22')" ] }, { @@ -159,8 +232,44 @@ { "data": { "text/html": [ - "
Make this Notebook Trusted to load map: File -> Trust Notebook
" + "</script>\n", + "</html>\" width=\"100%\" height=\"600\"style=\"border:none !important;\" \"allowfullscreen\" \"webkitallowfullscreen\" \"mozallowfullscreen\">" ], "text/plain": [ - "" + "" ] }, "execution_count": 5, @@ -387,8 +536,7 @@ } ], "source": [ - "l7_vis_params = dict(min=7300, max=13000, bands=[\n", - " 'SR_B3', 'SR_B2', 'SR_B1'], gamma=1.5)\n", + "l7_vis_params = dict(min=7300, max=13000, bands=['SR_B3', 'SR_B2', 'SR_B1'], gamma=1.5)\n", "map = geemap.Map()\n", "\n", "map.centerObject(ee.Geometry(region), 11)\n", @@ -396,19 +544,13 @@ " im = gd.MaskedImage.from_id(im_id, mask=False)\n", " map.addLayer(im.ee_image.clip(region), l7_vis_params, im_id[-20:])\n", "\n", - "map.addLayer(\n", - " mosaic_im.ee_image.clip(region), l7_vis_params, 'Mosaic composite'\n", - ")\n", - "map.addLayer(\n", - " q_mosaic_im.ee_image.clip(region), l7_vis_params, 'Q-mosaic composite'\n", - ")\n", + "map.addLayer(mosaic_im.ee_image.clip(region), l7_vis_params, 'Mosaic composite')\n", + "map.addLayer(q_mosaic_im.ee_image.clip(region), l7_vis_params, 'Q-mosaic composite')\n", "\n", - "region_im = ee.Image().byte().paint(\n", - " featureCollection=ee.Geometry(region), width=2, color=1\n", - ")\n", + "region_im = ee.Image().byte().paint(featureCollection=ee.Geometry(region), width=2, color=1)\n", "map.addLayer(region_im, dict(palette=['FF0000']), 'Region')\n", "\n", - "map\n" + "map" ] }, { @@ -417,8 +559,8 @@ "source": [ "#### Visualisation notes\n", "\n", - "* The *mosaic* method image contains some artefacts due to remnant cloud in the masked input images.\n", - "* By prioritising pixels with the highest distance to cloud, the *q-mosaic* method is robust to imperfect cloud/shadow masking, and produces a composite free of cloud artefacts.\n", + "* The *mosaic* method composite contains some artefacts due to remnant cloud in the masked component images.\n", + "* The *q-mosaic* method prioritises pixels with the highest distance to cloud and is more robust to imperfect cloud/shadow masking. It produces a composite free of cloud artefacts.\n", "\n", "### Download\n", "\n", @@ -430,15 +572,49 @@ "execution_count": 6, "metadata": {}, "outputs": [ + { + "data": { + "text/html": [ + "\n", + " \n", + " " + ], + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, { "data": { "application/vnd.jupyter.widget-view+json": { - "model_id": "d1577db2495041da8f7738f082334fdd", + "model_id": "9ac9462df1ae4fd19814b5faa3effaf6", "version_major": 2, "version_minor": 0 }, "text/plain": [ - "l7_q_mosaic_im.tif: | | 0.00/108M (raw) [ 0.0%] in 00:00 (et…" + "l7_q_mosaic_im.tif: | | 0.00/10…" ] }, "metadata": {}, @@ -449,9 +625,10 @@ "# download the q_mosaic composite image, specifying crs, scale and region as\n", "# it has no fixed projection\n", "q_mosaic_im.download(\n", - " 'l7_q_mosaic_im.tif', crs='EPSG:3857', scale=30, region=region, \n", - " dtype='uint16', overwrite=True\n", - ")" + " 'l7_q_mosaic_im.tif', crs='EPSG:3857', scale=30, region=region, dtype='uint16', overwrite=True\n", + ")\n", + "\n", + "# !geedim search -c l7-c2-l2 -s 2016-11-01 -e 2016-12-19 --bbox 18.723 -34.115 19.075 -33.731 -cp 40 composite -cm q-mosaic download --crs EPSG:3857 --scale 30 --dtype uint16 -o" ] } ], @@ -471,689 +648,99 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - 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