diff --git a/applications/client/package.json b/applications/client/package.json index 7fd00ad43..2b3995cea 100644 --- a/applications/client/package.json +++ b/applications/client/package.json @@ -15,6 +15,7 @@ "@dataspecer/sgov-adapter": "*", "@dataspecer/shacl": "*", "@dataspecer/sparql-query": "*", + "@dataspecer/wikidata-experimental-adapter": "*", "@dataspecer/xml": "*", "@emotion/css": "^11.10.6", "@emotion/react": "^11.10.6", diff --git a/applications/client/src/editor/configuration/adapters/get-adapter.ts b/applications/client/src/editor/configuration/adapters/get-adapter.ts index 734456be8..b65449922 100644 --- a/applications/client/src/editor/configuration/adapters/get-adapter.ts +++ b/applications/client/src/editor/configuration/adapters/get-adapter.ts @@ -2,13 +2,25 @@ import {PrefixIriProvider} from "@dataspecer/core/cim"; import {httpFetch} from "@dataspecer/core/io/fetch/fetch-browser"; import {RdfsFileAdapter} from "@dataspecer/rdfs-adapter"; import {SgovAdapter} from "@dataspecer/sgov-adapter"; +import {WikidataAdapter} from "@dataspecer/wikidata-experimental-adapter"; // todo: this is a temporary solution export const getAdapter = (urls: string[]) => { const iriProvider = new PrefixIriProvider(); - const cimAdapter = urls.length > 0 ? - new RdfsFileAdapter(urls, httpFetch) : - new SgovAdapter("https://slovník.gov.cz/sparql", httpFetch); + + if (urls.length === 0) { + const cimAdapter = new SgovAdapter("https://slovník.gov.cz/sparql", httpFetch); + cimAdapter.setIriProvider(iriProvider); + return {iriProvider, cimAdapter}; + } + + if (urls.length === 1 && urls[0] === "https://dataspecer.com/adapters/wikidata") { + const cimAdapter = new WikidataAdapter(httpFetch); + cimAdapter.setIriProvider(iriProvider); + return {iriProvider, cimAdapter}; + } + + const cimAdapter = new RdfsFileAdapter(urls, httpFetch); cimAdapter.setIriProvider(iriProvider); return {iriProvider, cimAdapter}; } diff --git a/applications/client/src/manager/routes/specification/conceptual-model-sources.tsx b/applications/client/src/manager/routes/specification/conceptual-model-sources.tsx index b3ab50fdc..f5e90451e 100644 --- a/applications/client/src/manager/routes/specification/conceptual-model-sources.tsx +++ b/applications/client/src/manager/routes/specification/conceptual-model-sources.tsx @@ -1,6 +1,6 @@ import { Box, Button, - Card, CardContent, Collapse, + Card, CardContent, Chip, Collapse, FormControl, FormControlLabel, FormLabel, @@ -39,16 +39,20 @@ export const ConceptualModelSources: FC = (props) = } } +const WIKIDATA_ADAPTER = "https://dataspecer.com/adapters/wikidata"; + const ConceptualModelSourcesWithData: FC = ({dataSpecificationIri, dataSpecification}) => { const {dataSpecifications, setDataSpecifications} = useContext(DataSpecificationsContext); const backendConnector = useContext(BackendConnectorContext); const {enqueueSnackbar} = useSnackbar(); - const [radio, setRadio] = useState((dataSpecification.cimAdapters?.length ?? 0) === 0 ? "sgov" : "files"); - const [urls, setUrls] = useState(dataSpecification.cimAdapters ?? []); + const adapters = dataSpecification.cimAdapters ?? []; + + const [radio, setRadio] = useState(adapters.length === 0 ? "sgov" : (adapters.length === 1 && adapters[0] === WIKIDATA_ADAPTER ? "wikidata" : "files")); + const [urls, setUrls] = useState(dataSpecification.cimAdapters); const handleSave = useCallback(async () => { - const cimAdapters = radio === "sgov" ? [] : urls.filter(url => url.length > 0); + const cimAdapters = radio === "sgov" ? [] : (radio === "wikidata" ? [WIKIDATA_ADAPTER] : urls.filter(url => url.length > 0)); const newSpecification = await backendConnector.updateDataSpecification(dataSpecificationIri, {cimAdapters}); setDataSpecifications({...dataSpecifications, [newSpecification.iri]: newSpecification}); enqueueSnackbar("Sources configuration saved", {variant: "success"}); @@ -71,6 +75,7 @@ const ConceptualModelSourcesWithData: FC = > } label="slovník.gov.cz" /> } label="RDF files" /> + } label={<>Wikidata } /> diff --git a/packages/wikidata-experimental-adapter/.gitignore b/packages/wikidata-experimental-adapter/.gitignore new file mode 100644 index 000000000..ab204c78d --- /dev/null +++ b/packages/wikidata-experimental-adapter/.gitignore @@ -0,0 +1,3 @@ +node_modules +lib +!.gitignore diff --git a/packages/wikidata-experimental-adapter/README.md b/packages/wikidata-experimental-adapter/README.md new file mode 100644 index 000000000..77bf29777 --- /dev/null +++ b/packages/wikidata-experimental-adapter/README.md @@ -0,0 +1,29 @@ +# Wikidata experimental adapter + +## What can it do? + +- full hierarchy + - children + - parents +- surroundings + - parents in height 1 + - children in depth 1 + - attributes (wikidata properties that do not point to items based on subject contraint) + - associations + - internaly there are outward pimAssociations but I need to add pimClasses for the endpoints. +## How to start it up? + +1. `> git clone repository` +2. `> cd repository` +3. `> git fetch` just in case +4. `> git switch feature/wikidata-adapter` +5. `> npm install` +6. `> npx lerna bootstrap` +7. `> npx lerna run build` +8. `> cd ./application/client` +9. `> npm run build:watch` +10. open your localhost at 3000 +11. to see changes in code do: + 1. from root run `> cd packages/wikidata-experimental-feature` + 2. `> npm run build:watch` simultaneously with 7. command inside client. + 3. to build queries run `> npm run prebuild` and then again `> npm run build:watch` \ No newline at end of file diff --git a/packages/wikidata-experimental-adapter/build/compile-sparql.js b/packages/wikidata-experimental-adapter/build/compile-sparql.js new file mode 100644 index 000000000..76e6ad3db --- /dev/null +++ b/packages/wikidata-experimental-adapter/build/compile-sparql.js @@ -0,0 +1,32 @@ +const { join, dirname } = require('path'); +const { existsSync, readdirSync, lstatSync, readFileSync, writeFileSync, mkdirSync } = require('fs'); +const { process } = require('./sparql-loader'); + +const found = []; + +function fromDir(startPath, filter, found) { + if (!existsSync(startPath)) { + return; + } + + var files = readdirSync(startPath); + for (var i = 0; i < files.length; i++) { + var filename = join(startPath, files[i]); + var stat = lstatSync(filename); + if (stat.isDirectory()) { + fromDir(filename, filter, found); //recurse + } else if (filename.endsWith(filter)) { + found.push(filename); + }; + }; +}; + +fromDir('./src', '.sparql', found); + +for (const file of found) { + const rawData = readFileSync(file); + const transformed = process(rawData.toString()).code; + const newFile = 'lib' + file.substring('src'.length) + '.js'; + mkdirSync(dirname(newFile), {recursive: true}); + writeFileSync(newFile, transformed); +} diff --git a/packages/wikidata-experimental-adapter/build/prebuild.js b/packages/wikidata-experimental-adapter/build/prebuild.js new file mode 100644 index 000000000..9721b4b95 --- /dev/null +++ b/packages/wikidata-experimental-adapter/build/prebuild.js @@ -0,0 +1,2 @@ +require("rimraf").sync("lib"); +require("./compile-sparql"); diff --git a/packages/wikidata-experimental-adapter/build/sparql-loader.js b/packages/wikidata-experimental-adapter/build/sparql-loader.js new file mode 100644 index 000000000..e3bdb1fe3 --- /dev/null +++ b/packages/wikidata-experimental-adapter/build/sparql-loader.js @@ -0,0 +1,29 @@ +// Converts .sparql files into .js files that can be imported + +function processSparql(input) { + const minified = input.replace(/^\s*#.*$/gm, "").replace(/\s+/g, " "); + const parts = minified + .split(/%[A-Z_]+%/) + .map(part => JSON.stringify(part)); + const variables = [...minified + .matchAll(/%([A-Z_]+)%/g)] + .map(([,variable]) => + variable + .toLowerCase() + .replace(/_+(.)/g, (_, chr) => chr.toUpperCase()) + ).map(key => `p.${key}`); + + // zip the arrays + const zipped = parts.flatMap((part, i) => [part, variables[i] ?? ""]); + + return zipped.filter(p => p.length > 0).join(" +\n\t"); +} + +module.exports = { + process: content => ({ + code: `"use strict";\n` + + `Object.defineProperty(exports, "__esModule", { value: true });\n` + + `var a = p => ${processSparql(content)};\n` + + `exports.default = a;\n` + }) +}; diff --git a/packages/wikidata-experimental-adapter/jest.config.js b/packages/wikidata-experimental-adapter/jest.config.js new file mode 100644 index 000000000..265408f65 --- /dev/null +++ b/packages/wikidata-experimental-adapter/jest.config.js @@ -0,0 +1,14 @@ +module.exports = { + "verbose": true, + "moduleFileExtensions": [ + "js", + "ts", + ], + "transform": { + "^.+\\.[t|j]sx?$": "ts-jest", + "\\.sparql$": "./build/sparql-loader.js", + }, + "roots": [ + "src", + ], +}; diff --git a/packages/wikidata-experimental-adapter/package-lock.json b/packages/wikidata-experimental-adapter/package-lock.json new file mode 100644 index 000000000..23f21501c --- /dev/null +++ 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b/packages/wikidata-experimental-adapter/src/@types/sparql.ts new file mode 100644 index 000000000..15d453568 --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/@types/sparql.ts @@ -0,0 +1,4 @@ +declare module "*.sparql" { + const contents: (parameters: Record) => string; + export = contents +} diff --git a/packages/wikidata-experimental-adapter/src/entity-adapters/php-api-wikidata-entity-adapter.ts b/packages/wikidata-experimental-adapter/src/entity-adapters/php-api-wikidata-entity-adapter.ts new file mode 100644 index 000000000..db375968d --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/entity-adapters/php-api-wikidata-entity-adapter.ts @@ -0,0 +1,91 @@ +import { LanguageString } from "@dataspecer/core/core"; +import { WIKIDATA, WIKIDATA_ENTITY_PREFIX } from "../vocabulary"; +import { PimClass, PimResource } from "@dataspecer/core/pim/model"; +import { IriProvider } from "@dataspecer/core/cim"; + +type WikidataLanguageValue = { + language: string; + value: string; +} + +type WikidataLanguageObject = Record; + +type WikidataMainSnakEntityValue = { + value: { + id: string; + } +} + +type WikidataMainSnak = { + datavalue?: WikidataMainSnakEntityValue; +} + +type WikidataSnak = { + mainsnak: WikidataMainSnak; +} + +type WikidataClaims = Record; + +export class WikidataItemPhpWrap { + wikidataJsonObject: object; + + constructor(wikiwikidataJsonObject: object) { + this.wikidataJsonObject = wikiwikidataJsonObject; + } + + getIri(): string { + return WIKIDATA_ENTITY_PREFIX + this.wikidataJsonObject['id']; + } + + getEntityType(): string { + return this.wikidataJsonObject['type']; + } + + getParents(): string[] { + let parentsIris: string[] = []; + if ('claims' in this.wikidataJsonObject) { + const claims = this.wikidataJsonObject['claims'] as WikidataClaims; + const subclassOfProperty = this.getLastPartOfIri(WIKIDATA.subclassOf); + if (subclassOfProperty in claims) { + const parentsSnaks = claims[subclassOfProperty]; + parentsSnaks.forEach((snak) => { + const id = snak.mainsnak.datavalue?.value.id; + if (id != null) + parentsIris.push(WIKIDATA_ENTITY_PREFIX + id); + }); + } + } + return parentsIris; + } + + getDescriptions(): LanguageString { + if ('descriptions' in this.wikidataJsonObject) { + return this.convertWikidataLanguageObjectToLanguageStrings(this.wikidataJsonObject['descriptions'] as WikidataLanguageObject); + } + return {}; + } + + getLabels(): LanguageString { + if ('labels' in this.wikidataJsonObject) { + return this.convertWikidataLanguageObjectToLanguageStrings(this.wikidataJsonObject['labels'] as WikidataLanguageObject); + } + return {}; + } + + private convertWikidataLanguageObjectToLanguageStrings(wlo: WikidataLanguageObject): LanguageString { + return Object.fromEntries(Object.entries(wlo).map((o) => [o[1].language, o[1].value])); + } + + private getLastPartOfIri(iri: string): string { + return iri.split("/").pop(); + } + +} + +export async function loadWikidataEntityFromPhpWrapToResource(entity: WikidataItemPhpWrap, idProvider: IriProvider, resource: PimResource): Promise { + resource.pimInterpretation = entity.getIri(); + resource.iri = idProvider.cimToPim(entity.getIri()); + resource.pimHumanDescription = entity.getDescriptions(); + resource.pimHumanLabel = entity.getLabels(); +} + \ No newline at end of file diff --git a/packages/wikidata-experimental-adapter/src/entity-adapters/php-api-wikidata-item-adapter.ts b/packages/wikidata-experimental-adapter/src/entity-adapters/php-api-wikidata-item-adapter.ts new file mode 100644 index 000000000..66f054863 --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/entity-adapters/php-api-wikidata-item-adapter.ts @@ -0,0 +1,23 @@ +import { PimClass } from "@dataspecer/core/pim/model"; +import { WikidataItemPhpWrap, loadWikidataEntityFromPhpWrapToResource } from "./php-api-wikidata-entity-adapter"; +import { IriProvider } from "@dataspecer/core/cim"; + + +export async function isWikidataItemPhp(entity: WikidataItemPhpWrap): Promise { + return entity.getEntityType() === 'item'; +} + +export async function loadWikidataItemFromPhpWrap( + entity: WikidataItemPhpWrap, + idProvider: IriProvider +): Promise { + const result = new PimClass(); + await loadWikidataEntityFromPhpWrapToResource(entity, idProvider, result); + result.pimIsCodelist = false; + result.pimExtends = unique(entity.getParents().map(idProvider.cimToPim)); + return result; +} + +function unique(values: T[]): T[] { + return [...new Set(values)]; +} diff --git a/packages/wikidata-experimental-adapter/src/entity-adapters/sparql-wikidata-association-attribute-adapter.ts b/packages/wikidata-experimental-adapter/src/entity-adapters/sparql-wikidata-association-attribute-adapter.ts new file mode 100644 index 000000000..0bb68fba1 --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/entity-adapters/sparql-wikidata-association-attribute-adapter.ts @@ -0,0 +1,100 @@ +import { RdfSource, RdfSourceWrap } from "@dataspecer/core/core/adapter/rdf"; +import { PimAssociation, PimAssociationEnd, PimAttribute } from "@dataspecer/core/pim/model"; +import { loadWikidataEntityToResource } from "./sparql-wikidata-entity-adapter"; +import { RDFS, WIKIBASE, WIKIDATA } from "../vocabulary"; +import { IriProvider } from "@dataspecer/core/cim"; +import { CoreResource } from "@dataspecer/core/core"; + +async function isWikidataOutwardAssociation( + entity: RdfSourceWrap +): Promise { + return (await entity.types()).includes(WIKIDATA.valueTypeConstraint); +} + +async function isWikidataInwardAssociation( + entity: RdfSourceWrap +): Promise { + return (await entity.types()).includes(WIKIDATA.subjectTypeConstraint); +} + +async function isAssociationFakeAttribute( + entity: RdfSourceWrap +): Promise { + return (await entity.node(WIKIBASE.propertyType)) !== WIKIBASE.wikibaseItem; +} + +export async function loadWikidataAssociationOrAttribute( + rootCimIri: string, + entity: RdfSourceWrap, + source: RdfSource, + idProvider: IriProvider +): Promise<[CoreResource[], string[]]> { + if (await isAssociationFakeAttribute(entity)) { + const pimAttribute = await loadWikidataFakeAttribute(rootCimIri, entity, idProvider); + return [[pimAttribute],[]]; + } + + let coreResources: CoreResource[] = []; + let newClassesIris: string[] = []; + + if (await isWikidataOutwardAssociation(entity)) { + const possibleObjects = await entity.property(RDFS.range); + for await (const o of possibleObjects) { + coreResources.push(...(await loadWikidataAssociation("out", rootCimIri, o.value, entity, idProvider))) + newClassesIris.push(o.value); + } + } + + if (await isWikidataInwardAssociation(entity)) { + const possibleSubjects = await entity.property(RDFS.domain); + for await (const s of possibleSubjects) { + if (s.value === rootCimIri) + continue; + coreResources.push(...(await loadWikidataAssociation("in", s.value, rootCimIri, entity, idProvider))) + newClassesIris.push(s.value); + } + } + + + return [coreResources, newClassesIris]; +} + +async function loadWikidataAssociation( + inOrOut: "in" | "out", + startIri: string, + endIri: string, + entityAssociation: RdfSourceWrap, + idProvider: IriProvider +): Promise<[PimAssociationEnd, PimAssociation, PimAssociationEnd]> { + const mediates1 = new PimAssociationEnd(); + mediates1.iri = idProvider.cimToPim(entityAssociation.iri + "#end-1-" + inOrOut + "-" + getLastPartOfIri(startIri) + "-" + getLastPartOfIri(endIri)); + mediates1.pimPart = idProvider.cimToPim(startIri); + + const mediates2 = new PimAssociationEnd(); + mediates2.iri = idProvider.cimToPim(entityAssociation.iri + "#end-2-" + inOrOut + "-" + getLastPartOfIri(startIri) + "-" + getLastPartOfIri(endIri)); + mediates2.pimPart = idProvider.cimToPim(endIri); + + const association = new PimAssociation(); + await loadWikidataEntityToResource(entityAssociation, idProvider, association); + association.iri += "#edge-" + inOrOut + "-" + getLastPartOfIri(startIri) + "-" + getLastPartOfIri(endIri); + association.pimIsOriented = true; + association.pimEnd = [mediates1.iri, mediates2.iri]; + + return [mediates1, association, mediates2]; +} + +async function loadWikidataFakeAttribute( + rootCimIri: string, + entity: RdfSourceWrap, + idProvider: IriProvider +): Promise { + const result = new PimAttribute(); + await loadWikidataEntityToResource(entity, idProvider, result); + result.iri += "#fake-attribute-" + getLastPartOfIri(rootCimIri); + result.pimOwnerClass = idProvider.cimToPim(rootCimIri); + return result; +} + +function getLastPartOfIri(iri: string): string { + return iri.split("/").pop(); +} \ No newline at end of file diff --git a/packages/wikidata-experimental-adapter/src/entity-adapters/sparql-wikidata-entity-adapter.ts b/packages/wikidata-experimental-adapter/src/entity-adapters/sparql-wikidata-entity-adapter.ts new file mode 100644 index 000000000..4adbb83d6 --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/entity-adapters/sparql-wikidata-entity-adapter.ts @@ -0,0 +1,22 @@ +import { RdfObject, RdfSourceWrap } from "@dataspecer/core/core/adapter/rdf"; +import { PimResource } from "@dataspecer/core/pim/model"; +import { LanguageString } from "@dataspecer/core/core"; +import { RDFS, SCHEMA } from "../vocabulary"; +import { IriProvider } from "@dataspecer/core/cim"; + +export async function loadWikidataEntityToResource( + entity: RdfSourceWrap, + idProvider: IriProvider, + resource: PimResource +): Promise { + const prefLabel = await entity.property(RDFS.label); + resource.pimHumanLabel = rdfObjectsToLanguageString(prefLabel); + const definition = await entity.property(SCHEMA.description); + resource.pimHumanDescription = rdfObjectsToLanguageString(definition); + resource.pimInterpretation = entity.iri; + resource.iri = idProvider.cimToPim(resource.pimInterpretation); +} + +function rdfObjectsToLanguageString(objects: RdfObject[]): LanguageString { + return Object.fromEntries(objects.map((o) => [o.language, o.value])); +} diff --git a/packages/wikidata-experimental-adapter/src/entity-adapters/sparql-wikidata-item-adapter.ts b/packages/wikidata-experimental-adapter/src/entity-adapters/sparql-wikidata-item-adapter.ts new file mode 100644 index 000000000..8e83b718d --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/entity-adapters/sparql-wikidata-item-adapter.ts @@ -0,0 +1,31 @@ + +import { RdfSourceWrap } from "@dataspecer/core/core/adapter/rdf"; +import { PimClass } from "@dataspecer/core/pim/model"; +import { RDFS, WIKIDATA } from "../vocabulary"; +import { loadWikidataEntityToResource } from "./sparql-wikidata-entity-adapter"; +import { IriProvider } from "@dataspecer/core/cim"; + +export async function isWikidataItem(entity: RdfSourceWrap): Promise { + return (await entity.types()).includes(WIKIDATA.item); +} + +export async function loadWikidataItem( + entity: RdfSourceWrap, + idProvider: IriProvider + ): Promise { + + const result = new PimClass(); + await loadWikidataEntityToResource(entity, idProvider, result); + + result.pimIsCodelist = false; + result.pimExtends = unique([ + ...result.pimExtends, + ...(await entity.nodes(RDFS.subClassOf)).map(idProvider.cimToPim), + ]); + + return result; + } + + function unique(values: T[]): T[] { + return [...new Set(values)]; + } \ No newline at end of file diff --git a/packages/wikidata-experimental-adapter/src/index.ts b/packages/wikidata-experimental-adapter/src/index.ts new file mode 100644 index 000000000..1e3cee186 --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/index.ts @@ -0,0 +1 @@ +export * from "./wikidata-adapter"; diff --git a/packages/wikidata-experimental-adapter/src/sparql-queries/get-class.sparql b/packages/wikidata-experimental-adapter/src/sparql-queries/get-class.sparql new file mode 100644 index 000000000..0d322c571 --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/sparql-queries/get-class.sparql @@ -0,0 +1,27 @@ +PREFIX rdfs: +PREFIX schema: +PREFIX skos: +PREFIX xsd: + +CONSTRUCT { + ?item a wd:Q16222597 ; + rdfs:label ?itemLabel ; + schema:description ?itemDescription ; + rdfs:subClassOf ?subClassOf . +} WHERE { + VALUES ?item { + %CLASS% + } + ?item ?predicate ?object . + SERVICE wikibase:label { + bd:serviceParam wikibase:language "en". + } + OPTIONAL { + ?item schema:description ?itemDescription . + FILTER(LANG(?itemDescription) = "en") + } + OPTIONAL { + ?item p:P279 ?statement . + ?statement ps:P279 ?subClassOf . + } +} \ No newline at end of file diff --git a/packages/wikidata-experimental-adapter/src/sparql-queries/get-full-hierarchy-children.sparql b/packages/wikidata-experimental-adapter/src/sparql-queries/get-full-hierarchy-children.sparql new file mode 100644 index 000000000..eea48bd62 --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/sparql-queries/get-full-hierarchy-children.sparql @@ -0,0 +1,19 @@ +PREFIX rdfs: +PREFIX schema: +PREFIX skos: +PREFIX xsd: + +CONSTRUCT { + ?item a wd:Q16222597 ; + rdfs:label ?itemLabel ; + schema:description ?itemDescription ; + rdfs:subClassOf ?linkTo . +} WHERE { + ?item wdt:P279* %CLASS% + OPTIONAL { ?item wdt:P279 ?linkTo } + OPTIONAL { + ?item schema:description ?itemDescription . + FILTER(LANG(?itemDescription) = "en") + } + SERVICE wikibase:label {bd:serviceParam wikibase:language "en" } +} \ No newline at end of file diff --git a/packages/wikidata-experimental-adapter/src/sparql-queries/get-full-hierarchy-parents.sparql b/packages/wikidata-experimental-adapter/src/sparql-queries/get-full-hierarchy-parents.sparql new file mode 100644 index 000000000..e0cb2db08 --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/sparql-queries/get-full-hierarchy-parents.sparql @@ -0,0 +1,19 @@ +PREFIX rdfs: +PREFIX schema: +PREFIX skos: +PREFIX xsd: + +CONSTRUCT { + ?item a wd:Q16222597 ; + rdfs:label ?itemLabel ; + schema:description ?itemDescription ; + rdfs:subClassOf ?linkTo . +} WHERE { + %CLASS% wdt:P279* ?item + OPTIONAL { ?item wdt:P279 ?linkTo } + OPTIONAL { + ?item schema:description ?itemDescription . + FILTER(LANG(?itemDescription) = "en") + } + SERVICE wikibase:label {bd:serviceParam wikibase:language "en" } +} \ No newline at end of file diff --git a/packages/wikidata-experimental-adapter/src/sparql-queries/get-surroundings-children.sparql b/packages/wikidata-experimental-adapter/src/sparql-queries/get-surroundings-children.sparql new file mode 100644 index 000000000..58eafda00 --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/sparql-queries/get-surroundings-children.sparql @@ -0,0 +1,21 @@ +PREFIX rdfs: +PREFIX schema: +PREFIX skos: +PREFIX xsd: + +CONSTRUCT { + ?child a wd:Q16222597 ; + rdfs:subClassOf ?linkTo ; + rdfs:label ?childLabel ; + schema:description ?childDescription . +} WHERE { + ?child wdt:P279 %CLASS% + OPTIONAL { + ?child wdt:P279 ?linkTo + } + OPTIONAL { + ?child schema:description ?childDescription . + FILTER(LANG(?childDescription) = "en") + } + SERVICE wikibase:label {bd:serviceParam wikibase:language "en" } +} \ No newline at end of file diff --git a/packages/wikidata-experimental-adapter/src/sparql-queries/get-surroundings-inward-associations.sparql b/packages/wikidata-experimental-adapter/src/sparql-queries/get-surroundings-inward-associations.sparql new file mode 100644 index 000000000..d7900f082 --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/sparql-queries/get-surroundings-inward-associations.sparql @@ -0,0 +1,30 @@ +PREFIX rdfs: +PREFIX schema: +PREFIX skos: +PREFIX xsd: + +CONSTRUCT { + <__search_results> <__has_search_results> ?property . + ?property a wd:Q21503250 ; + rdfs:label ?propertyLabel ; + schema:description ?propertyDescription ; + rdfs:domain ?subjectConstraint ; + wikibase:propertyType ?type . +} WHERE { + ?property p:P2302 ?statement ; + wikibase:propertyType ?type . + ?statement ps:P2302 wd:Q21510865 ; + pq:P2308 %CLASS% . + OPTIONAL { + ?property p:P2302 ?statementSecond . + ?statementSecond ps:P2302 wd:Q21503250 ; + pq:P2308 ?subjectConstraint . + } + OPTIONAL { + ?property schema:description ?propertyDescription . + FILTER(LANG(?propertyDescription) = "en") + } + SERVICE wikibase:label { bd:serviceParam wikibase:language "en". } +} + + diff --git a/packages/wikidata-experimental-adapter/src/sparql-queries/get-surroundings-outward-associations.sparql b/packages/wikidata-experimental-adapter/src/sparql-queries/get-surroundings-outward-associations.sparql new file mode 100644 index 000000000..103ac5f59 --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/sparql-queries/get-surroundings-outward-associations.sparql @@ -0,0 +1,29 @@ +PREFIX rdfs: +PREFIX schema: +PREFIX skos: +PREFIX xsd: + +CONSTRUCT { + <__search_results> <__has_search_results> ?property . + ?property a wd:Q21510865 ; + rdfs:label ?propertyLabel ; + schema:description ?propertyDescription ; + rdfs:range ?valueConstraint ; + wikibase:propertyType ?type . +} WHERE { + ?property p:P2302 ?statement ; + wikibase:propertyType ?type . + ?statement ps:P2302 wd:Q21503250 ; + pq:P2308 %CLASS% . + OPTIONAL { + ?property p:P2302 ?statementSecond . + ?statementSecond ps:P2302 wd:Q21510865 ; + pq:P2308 ?valueConstraint . + } + OPTIONAL { + ?property schema:description ?propertyDescription . + FILTER(LANG(?propertyDescription) = "en") + } + SERVICE wikibase:label { bd:serviceParam wikibase:language "en". } +} + diff --git a/packages/wikidata-experimental-adapter/src/sparql-queries/get-surroundings-parents.sparql b/packages/wikidata-experimental-adapter/src/sparql-queries/get-surroundings-parents.sparql new file mode 100644 index 000000000..c4b2a842b --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/sparql-queries/get-surroundings-parents.sparql @@ -0,0 +1,26 @@ +PREFIX rdfs: +PREFIX schema: +PREFIX skos: +PREFIX xsd: + +CONSTRUCT { + %CLASS% rdfs:subClassOf ?parent . + ?parent a wd:Q16222597 ; + rdfs:label ?parentLabel ; + schema:description ?parentDescription ; + rdfs:subClassOf ?parentOfParent . +} WHERE { + %CLASS% p:P279 ?statement . + ?statement ps:P279 ?parent . + SERVICE wikibase:label { + bd:serviceParam wikibase:language "en". + } + OPTIONAL { + ?parent schema:description ?parentDescription . + FILTER(LANG(?parentDescription) = "en") + } + OPTIONAL { + ?parent p:P279 ?parentStatement . + ?parentStatement ps:P279 ?parentOfParent . + } +} \ No newline at end of file diff --git a/packages/wikidata-experimental-adapter/src/sparql-queries/search.sparql b/packages/wikidata-experimental-adapter/src/sparql-queries/search.sparql new file mode 100644 index 000000000..9bf5f532f --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/sparql-queries/search.sparql @@ -0,0 +1,34 @@ +PREFIX rdfs: +PREFIX schema: +PREFIX skos: +PREFIX xsd: + +CONSTRUCT { + <__search_results> <__has_search_result> ?item . + ?item + <__order> ?num ; + rdfs:label ?itemLabel ; + schema:description ?itemDescription ; + rdfs:subClassOf ?subClassOf . +} WHERE { + SERVICE wikibase:mwapi { + bd:serviceParam wikibase:endpoint "www.wikidata.org" ; + wikibase:api "EntitySearch" ; + mwapi:search %QUERY% ; + mwapi:language "en" ; + mwapi:limit 20 . + ?item wikibase:apiOutputItem mwapi:item. + ?num wikibase:apiOrdinal true. + } + SERVICE wikibase:label { + bd:serviceParam wikibase:language "en" . + } + OPTIONAL { + ?item schema:description ?itemDescription . + FILTER(LANG(?itemDescription) = "en") + } + OPTIONAL { + ?item p:P279 ?statement . + ?statement ps:P279 ?subClassOf . + } +} ORDER BY ASC(?num) \ No newline at end of file diff --git a/packages/wikidata-experimental-adapter/src/vocabulary.ts b/packages/wikidata-experimental-adapter/src/vocabulary.ts new file mode 100644 index 000000000..e27c58e97 --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/vocabulary.ts @@ -0,0 +1,60 @@ +const OFN_TYPE_PREFIX = + "https://ofn.gov.cz/zdroj/základní-datové-typy/2020-07-01/"; + +export const OFN = { + boolean: OFN_TYPE_PREFIX + "boolean", + date: OFN_TYPE_PREFIX + "datum", + time: OFN_TYPE_PREFIX + "čas", + dateTime: OFN_TYPE_PREFIX + "datum-a-čas", + integer: OFN_TYPE_PREFIX + "celé-číslo", + decimal: OFN_TYPE_PREFIX + "desetinné-číslo", + url: OFN_TYPE_PREFIX + "url", + string: OFN_TYPE_PREFIX + "řetězec", + text: OFN_TYPE_PREFIX + "text", +}; + +export const XSD_PREFIX = "http://www.w3.org/2001/XMLSchema#"; + +export const XSD = { + string: XSD_PREFIX + "string", + decimal: XSD_PREFIX + "decimal", + integer: XSD_PREFIX + "integer", + boolean: XSD_PREFIX + "boolean", + date: XSD_PREFIX + "date", + time: XSD_PREFIX + "time", + dateTimeStamp: XSD_PREFIX + "dateTimeStamp", + anyURI: XSD_PREFIX + "anyURI", +}; + +export const RDF = { + type: "http://www.w3.org/1999/02/22-rdf-syntax-ns#type", +}; + +export const RDFS = { + subClassOf: "http://www.w3.org/2000/01/rdf-schema#subClassOf", + domain: "http://www.w3.org/2000/01/rdf-schema#domain", + range: "http://www.w3.org/2000/01/rdf-schema#range", + label: "http://www.w3.org/2000/01/rdf-schema#label", +}; + +export const SCHEMA = { + description: "http://schema.org/description", +} + +export const WIKIDATA_SPARQL_FREE_VAR_PREFIX = "http://query.wikidata.org/bigdata/namespace/wdq/"; + +export const WIKIDATA_ENTITY_PREFIX = "http://www.wikidata.org/entity/"; + +export const WIKIDATA = { + item: WIKIDATA_ENTITY_PREFIX + "Q16222597", + valueTypeConstraint: WIKIDATA_ENTITY_PREFIX + "Q21510865", + subjectTypeConstraint: WIKIDATA_ENTITY_PREFIX + "Q21503250", + subclassOf: WIKIDATA_ENTITY_PREFIX + "P279", +} + +export const WIKIBASE_TYPE_PREFIX = "http://wikiba.se/ontology#"; + +export const WIKIBASE = { + wikibaseItem: WIKIBASE_TYPE_PREFIX + "WikibaseItem", + propertyType: WIKIBASE_TYPE_PREFIX + "propertyType", +} diff --git a/packages/wikidata-experimental-adapter/src/wikidata-adapter.ts b/packages/wikidata-experimental-adapter/src/wikidata-adapter.ts new file mode 100644 index 000000000..81978f521 --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/wikidata-adapter.ts @@ -0,0 +1,285 @@ +import jsStringEscape from "js-string-escape"; +import search from "./sparql-queries/search.sparql"; +import getClass from "./sparql-queries/get-class.sparql"; +import getSurroundingsParents from "./sparql-queries/get-surroundings-parents.sparql"; +import getSurroundingsChildren from "./sparql-queries/get-surroundings-children.sparql"; +import getSurroundingsOutwardAssociations from "./sparql-queries/get-surroundings-outward-associations.sparql"; +import getSurroundingsInwardAssociations from "./sparql-queries/get-surroundings-inward-associations.sparql"; +import getFullHierarchyChildren from "./sparql-queries/get-full-hierarchy-children.sparql"; +import getFullHierarchyParents from "./sparql-queries/get-full-hierarchy-parents.sparql"; +import {CimAdapter, IriProvider} from "@dataspecer/core/cim"; +import {HttpFetch} from "@dataspecer/core/io/fetch/fetch-api"; +import {OFN, XSD, WIKIDATA_SPARQL_FREE_VAR_PREFIX, RDFS} from "./vocabulary"; +import {PimClass} from "@dataspecer/core/pim/model/pim-class"; +import {CoreResource, ReadOnlyMemoryStore} from "@dataspecer/core/core"; +import {CoreResourceReader} from "@dataspecer/core/core/core-reader"; +import { RdfSource, RdfSourceWrap } from "@dataspecer/core/core/adapter/rdf"; +import { SparqlQueryRdfSource } from "@dataspecer/core/io/rdf/sparql/sparql-query-rdf-source"; +import { loadWikidataItem, isWikidataItem } from "./entity-adapters/sparql-wikidata-item-adapter"; +import { FederatedSource } from "@dataspecer/core/io/rdf/federated/federated-rdf-source"; +import { loadWikidataAssociationOrAttribute } from "./entity-adapters/sparql-wikidata-association-attribute-adapter"; +import { WikidataPhpGetEntities } from "./wikidata-php-api/wikidata-php-api-get-entities"; +import { isWikidataItemPhp, loadWikidataItemFromPhpWrap } from "./entity-adapters/php-api-wikidata-item-adapter"; +import { loadWikidataEntityFromPhpWrapToResource } from "./entity-adapters/php-api-wikidata-entity-adapter"; + +const getSurroundingsParentsAndChilren = [ + getClass, + getSurroundingsChildren, + getSurroundingsParents, +]; + +const getSurroundingsAssociations = [ + getSurroundingsOutwardAssociations, + getSurroundingsInwardAssociations, +] + +const getFullHierarchy = [ + getClass, + getFullHierarchyParents, + getFullHierarchyChildren, +] + +const searchQuery = (searchString: string) => search({query: `"${jsStringEscape(searchString)}"`}); + +const getClassQuery = (cimIri: string) => getClass({class: `<${cimIri}>`}); + +const getSurroundingsParentsAndChilrenQuery = (cimIri: string) => getSurroundingsParentsAndChilren.map(q => q({class: `<${cimIri}>`})); + +const getFullHierarchyQuery = (cimIri: string) => getFullHierarchy.map(q => q({class: `<${cimIri}>`})); + +const getSurroundingsAssociationsQuery = (cimIri: string) => getSurroundingsAssociations.map(q => q({class: `<${cimIri}>`})); + + +const IRI_REGEXP = new RegExp("^http://www.wikidata.org/entity/Q[1-9][0-9]*$"); + +export class WikidataAdapter implements CimAdapter { + protected readonly WIKIDATA_SPARQL_ENDPOINT = "https://query.wikidata.org/sparql"; + protected readonly httpFetch: HttpFetch; + protected iriProvider!: IriProvider; + + constructor(httpFetch: HttpFetch) { + this.httpFetch = httpFetch; + } + + setIriProvider(iriProvider: IriProvider): void { + this.iriProvider = iriProvider; + } + + /** + * Maps IRI to a datatype used in Dataspecer. If the IRI does not represent a datatype, undefined is returned. + * If the datatype is unknown, null is returned. + */ + protected mapDatatype(iri: string): string | null | undefined { + const mapping = { + [XSD.boolean]: OFN.boolean, + [XSD.date]: OFN.date, + [XSD.time]: OFN.time, + [XSD.dateTimeStamp]: OFN.dateTime, + [XSD.integer]: OFN.integer, + [XSD.decimal]: OFN.decimal, + [XSD.anyURI]: OFN.url, + [XSD.string]: OFN.string, + } + + if (Object.hasOwn(mapping, iri)) { + return mapping[iri]; + } + + return undefined; + } + + // @todo implement + async search(searchString: string): Promise { + if (!this.iriProvider) { + throw new Error("Missing IRI provider."); + } + const source = new SparqlQueryRdfSource( + this.httpFetch, + this.WIKIDATA_SPARQL_ENDPOINT, + searchQuery(searchString) + ); + await source.query(); + + const results = await source.property( + this.varToWikidataSparqlVar("__search_results"), + this.varToWikidataSparqlVar("__has_search_result") + ); + + let sorted = []; + for await (const result of results) { + const resultWrap = RdfSourceWrap.forIri(result.value, source); + sorted.push({ + sort: Number((await resultWrap.property(this.varToWikidataSparqlVar("__order")))[0].value), + cls: await loadWikidataItem(resultWrap, this.iriProvider), + }); + } + sorted = sorted.sort((a, b) => a.sort - b.sort).map((p) => p.cls); + + if (IRI_REGEXP.test(searchString)) { + const classByIri = await this.getClass(searchString); + if (classByIri) { + sorted = [classByIri]; + } else sorted = [] + } + + return sorted; + } + + // @todo implement + async getClass(cimIri: string): Promise { + if (!this.iriProvider) { + throw new Error("Missing IRI provider."); + } + const source = new SparqlQueryRdfSource( + this.httpFetch, + this.WIKIDATA_SPARQL_ENDPOINT, + getClassQuery(cimIri) + ); + await source.query(); + + const resultWrap = RdfSourceWrap.forIri(cimIri, source); + if (!(await isWikidataItem(resultWrap))) { + return null; + } + return await loadWikidataItem(resultWrap, this.iriProvider); + } + + //http://www.wikidata.org/entity/Q5 + // @todo implement + async getSurroundings(cimIri: string): Promise { + if (!this.iriProvider) { + throw new Error("Missing IRI provider."); + } + + const [associationsSources, associationsFinishPromise] = + this.createGroupQuerySparqlSources(cimIri, getSurroundingsAssociationsQuery); + const [parentsChildrenSources, parentsChildrenFinishPromise] = + this.createGroupQuerySparqlSources(cimIri, getSurroundingsParentsAndChilrenQuery); + + // Work on parents because associations queries take longer. + await parentsChildrenFinishPromise; + const parentsChildrenSource = FederatedSource.createExhaustive(parentsChildrenSources); + let resources = await this.loadChildrenAndParentsFromEntity(cimIri, parentsChildrenSource); + + await associationsFinishPromise; + const associationsSource = FederatedSource.createExhaustive(associationsSources); + resources = await this.loadAssociationsAndItsTypesFromEntity(cimIri, associationsSource, resources); + + return ReadOnlyMemoryStore.create(resources); + } + + async getFullHierarchy(cimIri: string): Promise { + if (!this.iriProvider) { + throw new Error("Missing IRI provider."); + } + + const sources = getFullHierarchyQuery(cimIri).map( + (query) => new SparqlQueryRdfSource(this.httpFetch, this.WIKIDATA_SPARQL_ENDPOINT, query) + ); + await Promise.all(sources.map((q) => q.query())); + const source = FederatedSource.createExhaustive(sources); + const resources = await this.loadChildrenAndParentsFromEntity(cimIri, source); + return ReadOnlyMemoryStore.create(resources); + } + + async getResourceGroup(cimIri: string): Promise { + // Keep as is + return []; + } + + protected varToWikidataSparqlVar(variable: string): string { + return WIKIDATA_SPARQL_FREE_VAR_PREFIX + variable; + } + + protected createGroupQuerySparqlSources( + cimIri: string, + groupQuery: (string) => string[] + ): [SparqlQueryRdfSource[], Promise] { + const sources = groupQuery(cimIri).map( + (query) => new SparqlQueryRdfSource(this.httpFetch, this.WIKIDATA_SPARQL_ENDPOINT, query) + ); + const finishPromise = Promise.all(sources.map((q) => q.query())); + return [sources, finishPromise]; + } + + protected async loadChildrenAndParentsFromEntity( + rootClassCimIri: string, + source: RdfSource + ): Promise<{ [iri: string]: CoreResource }> { + const resources: { [iri: string]: CoreResource } = {}; + + const classesProcessed = new Set(); + let cimIrisToProcess = [rootClassCimIri]; + while (cimIrisToProcess.length) { + const processedCimIri = cimIrisToProcess.pop(); + if (classesProcessed.has(processedCimIri)) { + continue; + } + classesProcessed.add(processedCimIri); + const rdfClassWrap = RdfSourceWrap.forIri(processedCimIri, source); + if (!(await isWikidataItem(rdfClassWrap))) { + continue; + } + + const pimClass = await loadWikidataItem(rdfClassWrap, this.iriProvider); + + const parentsCimIris = (await source.property(processedCimIri, RDFS.subClassOf)).map((r) => r.value); + const childrenCimIris = (await source.reverseProperty(RDFS.subClassOf, processedCimIri)).map((r) => r.value); + cimIrisToProcess = [...cimIrisToProcess, ...parentsCimIris, ...childrenCimIris]; + + resources[pimClass.iri] = pimClass; + } + return resources; + } + + protected async loadAssociationsAndItsTypesFromEntity( + rootClassCimIri: string, + source: RdfSource, + resources: { [iri: string]: CoreResource } + ): Promise<{ [iri: string]: CoreResource }> { + const processedCLasses = new Set(...Object.keys(resources).map(this.iriProvider.pimToCim)); + const classCimIrisToProcess: string[] = []; + + const associationsResults = await source.property( + this.varToWikidataSparqlVar("__search_results"), + this.varToWikidataSparqlVar("__has_search_results") + ); + + for await (const result of associationsResults) { + const rdfResultWrap = RdfSourceWrap.forIri(result.value, source); + const [coreResources, newClassIrisToProcess]: [CoreResource[], string[]] + = await loadWikidataAssociationOrAttribute(rootClassCimIri, rdfResultWrap, source, this.iriProvider); + coreResources.forEach((r) => resources[r.iri] = r); + newClassIrisToProcess.forEach((c) => { + if (!processedCLasses.has(c)) { + classCimIrisToProcess.push(c); + processedCLasses.add(c); + } + }) + } + + console.log(1); + const newPimClasses = await this.getClasses(classCimIrisToProcess); + newPimClasses.forEach((r) => resources[r.iri] = r); + console.log(2); + + return resources; + } + + protected async getClasses(cimIris: string[]): Promise { + if (!this.iriProvider) { + throw new Error("Missing IRI provider."); + } + + let newPimClasses: PimClass[] = [] + + const results = await WikidataPhpGetEntities(this.httpFetch, cimIris); + for await (const entityWrap of results) { + if (await isWikidataItemPhp(entityWrap)) { + const cls = await loadWikidataItemFromPhpWrap(entityWrap, this.iriProvider); + newPimClasses.push(cls); + } + } + return newPimClasses; + } +} diff --git a/packages/wikidata-experimental-adapter/src/wikidata-php-api/wikidata-php-api-get-entities.ts b/packages/wikidata-experimental-adapter/src/wikidata-php-api/wikidata-php-api-get-entities.ts new file mode 100644 index 000000000..9541a79b2 --- /dev/null +++ b/packages/wikidata-experimental-adapter/src/wikidata-php-api/wikidata-php-api-get-entities.ts @@ -0,0 +1,41 @@ +import { HttpFetch } from "@dataspecer/core/io/fetch/fetch-api"; +import { WikidataItemPhpWrap } from "../entity-adapters/php-api-wikidata-entity-adapter"; + +const WIKIDATA_PHP_API_GET_ENTITIES_URL: string = "https://www.wikidata.org/w/api.php?action=wbgetentities&languages=en&format=json&origin=*&props=labels|descriptions|claims|datatype"; + +export async function WikidataPhpGetEntities(httpFetch: HttpFetch, cimIris: string[]): Promise { + let results: WikidataItemPhpWrap[] = []; + let classesToQuery: string[] = [] + for await (const [i, cimIri] of cimIris.entries()) { + classesToQuery.push(cimIri); + if (classesToQuery.length === 49 || i + 1 === cimIris.length) { + results.push(...(await WikidataPhpGetEntitiesFetch49(httpFetch, classesToQuery))); + classesToQuery = []; + } + } + return results; +} + +async function WikidataPhpGetEntitiesFetch49(httpFetch: HttpFetch, cimIris: string[]): Promise { + const idsList: string = constructIdsList(cimIris); + const url: string = WIKIDATA_PHP_API_GET_ENTITIES_URL + "&ids=" + idsList; + const result = await (await httpFetch(url)).json() as object; + return (flattenGetEntitiesResponse(result)).map((e) => new WikidataItemPhpWrap(e)); +} + +function flattenGetEntitiesResponse(responseJson: object): object[] { + let items: object[] = []; + for (const [key, value] of Object.entries(responseJson['entities'])) { + items.push((value) as object); + } + return items; +} + +function constructIdsList(cimIris: string[]): string { + return cimIris.map(getLastPartOfIri).join('|'); +} + +function getLastPartOfIri(iri: string): string { + return iri.split("/").pop(); +} + diff --git a/packages/wikidata-experimental-adapter/tsconfig.json b/packages/wikidata-experimental-adapter/tsconfig.json new file mode 100644 index 000000000..765afbf4d --- /dev/null +++ b/packages/wikidata-experimental-adapter/tsconfig.json @@ -0,0 +1,14 @@ +{ + "compilerOptions": { + "declaration": true, + "declarationMap": true, + "esModuleInterop": true, + "moduleResolution": "Node16", + "outDir": "./lib/", + "sourceMap": true, + "target": "ESNext", + }, + "include": [ + "src/**/*" + ] +}