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modules.json
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{
"name": "CenterForMedicalGeneticsGhent/nf-cmgg-preprocessing",
"homePage": "https://github.com/CenterForMedicalGeneticsGhent/nf-cmgg-preprocessing",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bcl2fastq": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["bcl_demultiplex"]
},
"bclconvert": {
"branch": "master",
"git_sha": "e140d75607c5abcd6bbfedf290276323194aca79",
"installed_by": ["bcl_demultiplex"]
},
"biobambam/bamsormadup": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"],
"patch": "modules/nf-core/biobambam/bamsormadup/biobambam-bamsormadup.diff"
},
"bowtie2/align": {
"branch": "master",
"git_sha": "1fea64f5132a813ec97c1c6d3a74e0aee7142b6d",
"installed_by": ["fastq_align_dna"]
},
"bwa/mem": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"installed_by": ["fastq_align_dna"]
},
"bwamem2/mem": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"installed_by": ["fastq_align_dna"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "bba7e362e4afead70653f84d8700588ea28d0f9e",
"installed_by": ["modules"]
},
"dragmap/align": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["fastq_align_dna"]
},
"fastp": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"fgbio/fastqtobam": {
"branch": "master",
"git_sha": "19f81cab3b2a08f37c4f3727ddb30c01ebf07be6",
"installed_by": ["modules"]
},
"md5sum": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"mosdepth": {
"branch": "master",
"git_sha": "69e3eb17fb31b772b18f134d6e8f8b93ee980e65",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "4ab13872435962dadc239979554d13709e20bf29",
"installed_by": ["modules"]
},
"picard/collecthsmetrics": {
"branch": "master",
"git_sha": "20b0918591d4ba20047d7e13e5094bcceba81447",
"installed_by": ["modules"]
},
"picard/collectmultiplemetrics": {
"branch": "master",
"git_sha": "20b0918591d4ba20047d7e13e5094bcceba81447",
"installed_by": ["modules"]
},
"picard/collectwgsmetrics": {
"branch": "master",
"git_sha": "20b0918591d4ba20047d7e13e5094bcceba81447",
"installed_by": ["modules"]
},
"samtools/cat": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"installed_by": ["modules"]
},
"samtools/collatefastq": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"installed_by": ["modules"]
},
"samtools/convert": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"installed_by": ["bam_stats_samtools"]
},
"samtools/getrg": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"installed_by": ["modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"installed_by": ["bam_stats_samtools"]
},
"samtools/index": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"installed_by": ["modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"installed_by": ["bam_stats_samtools"]
},
"snapaligner/align": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["fastq_align_dna"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_stats_samtools": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"installed_by": ["subworkflows"]
},
"bcl_demultiplex": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["subworkflows"]
},
"fastq_align_dna": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["subworkflows"]
}
}
}
}
}
}